On the Structure and the Number of Prime Implicants of 2-CNFs

Let $m(n, k)$ be the maximum number of prime implicants that any $k$-CNF on n variables can have. We show that $3^{n/3} \le m(n,2) \le (1+o(1))3^{n/3}$

Characterizations of discrete Sugeno integrals as polynomial functions over distributive lattices

We give several characterizations of discrete Sugeno integrals over bounded distributive lattices, as particular cases of lattice polynomial functions, that is, functions which can be represented in the language of bounded lattices using variables and constants. We also consider the subclass of term functions as well as the classes of symmetric polynomial functions and weighted minimum and maximum functions, and present their characterizations, accordingly. Moreover, we discuss normal form representations of these functions

Understanding Space in Proof Complexity: Separations and Trade-offs via Substitutions

For current state-of-the-art DPLL SAT-solvers the two main bottlenecks are the amounts of time and memory used. In proof complexity, these resources correspond to the length and space of resolution proofs. There has been a long line of research investigating these proof complexity measures, but while strong results have been established for length, our understanding of space and how it relates to length has remained quite poor. In particular, the question whether resolution proofs can be optimized for length and space simultaneously, or whether there are trade-offs between these two measures, has remained essentially open. In this paper, we remedy this situation by proving a host of length-space trade-off results for resolution. Our collection of trade-offs cover almost the whole range of values for the space complexity of formulas, and most of the trade-offs are superpolynomial or even exponential and essentially tight. Using similar techniques, we show that these trade-offs in fact extend to the exponentially stronger k-DNF resolution proof systems, which operate with formulas in disjunctive normal form with terms of bounded arity k. We also answer the open question whether the k-DNF resolution systems form a strict hierarchy with respect to space in the affirmative. Our key technical contribution is the following, somewhat surprising, theorem: Any CNF formula F can be transformed by simple variable substitution into a new formula F' such that if F has the right properties, F' can be proven in essentially the same length as F, whereas on the other hand the minimal number of lines one needs to keep in memory simultaneously in any proof of F' is lower-bounded by the minimal number of variables needed simultaneously in any proof of F. Applying this theorem to so-called pebbling formulas defined in terms of pebble games on directed acyclic graphs, we obtain our results.Comment: This paper is a merged and updated version of the two ECCC technical reports TR09-034 and TR09-047, and it hence subsumes these two report

The exp-log normal form of types

Lambda calculi with algebraic data types lie at the core of functional programming languages and proof assistants, but conceal at least two fundamental theoretical problems already in the presence of the simplest non-trivial data type, the sum type. First, we do not know of an explicit and implemented algorithm for deciding the beta-eta-equality of terms---and this in spite of the first decidability results proven two decades ago. Second, it is not clear how to decide when two types are essentially the same, i.e. isomorphic, in spite of the meta-theoretic results on decidability of the isomorphism. In this paper, we present the exp-log normal form of types---derived from the representation of exponential polynomials via the unary exponential and logarithmic functions---that any type built from arrows, products, and sums, can be isomorphically mapped to. The type normal form can be used as a simple heuristic for deciding type isomorphism, thanks to the fact that it is a systematic application of the high-school identities. We then show that the type normal form allows to reduce the standard beta-eta equational theory of the lambda calculus to a specialized version of itself, while preserving the completeness of equality on terms. We end by describing an alternative representation of normal terms of the lambda calculus with sums, together with a Coq-implemented converter into/from our new term calculus. The difference with the only other previously implemented heuristic for deciding interesting instances of eta-equality by Balat, Di Cosmo, and Fiore, is that we exploit the type information of terms substantially and this often allows us to obtain a canonical representation of terms without performing sophisticated term analyses

Improved Pseudorandom Generators from Pseudorandom Multi-Switching Lemmas

We give the best known pseudorandom generators for two touchstone classes in unconditional derandomization: an $\varepsilon$-PRG for the class of size-$M$ depth-$d$ $\mathsf{AC}^0$ circuits with seed length $\log(M)^{d+O(1)}\cdot \log(1/\varepsilon)$, and an $\varepsilon$-PRG for the class of $S$-sparse $\mathbb{F}_2$ polynomials with seed length $2^{O(\sqrt{\log S})}\cdot \log(1/\varepsilon)$. These results bring the state of the art for unconditional derandomization of these classes into sharp alignment with the state of the art for computational hardness for all parameter settings: improving on the seed lengths of either PRG would require breakthrough progress on longstanding and notorious circuit lower bounds. The key enabling ingredient in our approach is a new \emph{pseudorandom multi-switching lemma}. We derandomize recently-developed \emph{multi}-switching lemmas, which are powerful generalizations of H{\aa}stad's switching lemma that deal with \emph{families} of depth-two circuits. Our pseudorandom multi-switching lemma---a randomness-efficient algorithm for sampling restrictions that simultaneously simplify all circuits in a family---achieves the parameters obtained by the (full randomness) multi-switching lemmas of Impagliazzo, Matthews, and Paturi [IMP12] and H{\aa}stad [H{\aa}s14]. This optimality of our derandomization translates into the optimality (given current circuit lower bounds) of our PRGs for $\mathsf{AC}^0$ and sparse $\mathbb{F}_2$ polynomials

A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data

A major theme in constraint-based modeling is unifying experimental data, such as biochemical information about the reactions that can occur in a system or the composition and localization of enzyme complexes, with highthroughput data including expression data, metabolomics, or DNA sequencing. The desired result is to increase predictive capability resulting in improved understanding of metabolism. The approach typically employed when only gene (or protein) intensities are available is the creation of tissue-specific models, which reduces the available reactions in an organism model, and does not provide an objective function for the estimation of fluxes, which is an important limitation in many modeling applications. We develop a method, flux assignment with LAD (least absolute deviation) convex objectives and normalization (FALCON), that employs metabolic network reconstructions along with expression data to estimate fluxes. In order to use such a method, accurate measures of enzyme complex abundance are needed, so we first present a new algorithm that addresses quantification of complex abundance. Our extensions to prior techniques include the capability to work with large models and significantly improved run-time performance even for smaller models, an improved analysis of enzyme complex formation logic, the ability to handle very large enzyme complex rules that may incorporate multiple isoforms, and depending on the model constraints, either maintained or significantly improved correlation with experimentally measured fluxes. FALCON has been implemented in MATLAB and ATS, and can be downloaded from: https://github.com/bbarker/FALCON. ATS is not required to compile the software, as intermediate C source code is available, and binaries are provided for Linux x86-64 systems. FALCON requires use of the COBRA Toolbox, also implemented in MATLAB.Comment: 30 pages, 12 figures, 4 table