The Role of Provenance Management in Accelerating the Rate of Astronomical Research

The availability of vast quantities of data through electronic archives has transformed astronomical research. It has also enabled the creation of new products, models and simulations, often from distributed input data and models, that are themselves made electronically available. These products will only provide maximal long-term value to astronomers when accompanied by records of their provenance; that is, records of the data and processes used in the creation of such products. We use the creation of image mosaics with the Montage grid-enabled mosaic engine to emphasize the necessity of provenance management and to understand the science requirements that higher-level products impose on provenance management technologies. We describe experiments with one technology, the "Provenance Aware Service Oriented Architecture" (PASOA), that stores provenance information at each step in the computation of a mosaic. The results inform the technical specifications of provenance management systems, including the need for extensible systems built on common standards. Finally, we describe examples of provenance management technology emerging from the fields of geophysics and oceanography that have applicability to astronomy applications.Comment: 8 pages, 1 figure; Proceedings of Science, 201

Metadata and provenance management

Scientists today collect, analyze, and generate TeraBytes and PetaBytes of data. These data are often shared and further processed and analyzed among collaborators. In order to facilitate sharing and data interpretations, data need to carry with it metadata about how the data was collected or generated, and provenance information about how the data was processed. This chapter describes metadata and provenance in the context of the data lifecycle. It also gives an overview of the approaches to metadata and provenance management, followed by examples of how applications use metadata and provenance in their scientific processes

The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their Provenance

We have used the Montage image mosaic engine to investigate the cost and performance of processing images on the Amazon EC2 cloud, and to inform the requirements that higher-level products impose on provenance management technologies. We will present a detailed comparison of the performance of Montage on the cloud and on the Abe high performance cluster at the National Center for Supercomputing Applications (NCSA). Because Montage generates many intermediate products, we have used it to understand the science requirements that higher-level products impose on provenance management technologies. We describe experiments with provenance management technologies such as the "Provenance Aware Service Oriented Architecture" (PASOA).Comment: 15 pages, 3 figur

End-to-end eScience: integrating workflow, query, visualization, and provenance at an ocean observatory

Journal ArticleData analysis tasks at an Ocean Observatory require integrative and and domain-specialized use of database, workflow, visualization systems. We describe a platform to support these tasks developed as part of the cyberinfrastructure at the NSF Science and Technology Center for Coastal Margin Observation and Prediction integrating a provenance-aware workflow system, 3D visualization, and a remote query engine for large-scale ocean circulation models. We show how these disparate tools complement each other and give examples of real scientific insights delivered by the integrated system. We conclude that data management solutions for eScience require this kind of holistic, integrative approach, explain how our approach may be generalized, and recommend a broader, application-oriented research agenda to explore relevant architectures

Radium-based estimates of cesium isotope transport and total direct ocean discharges from the Fukushima Nuclear Power Plant accident

© The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 10 (2013): 2159-2167, doi:10.5194/bg-10-2159-2013.Radium has four naturally occurring isotopes that have proven useful in constraining water mass source, age, and mixing rates in the coastal and open ocean. In this study, we used radium isotopes to determine the fate and flux of runoff-derived cesium from the Fukushima Dai-ichi Nuclear Power Plant (FNPP). During a June 2011 cruise, the highest cesium (Cs) concentrations were found along the eastern shelf of northern Japan, from Fukushima south, to the edge of the Kuroshio Current, and in an eddy ~ 130 km from the FNPP site. Locations with the highest cesium also had some of the highest radium activities, suggesting much of the direct ocean discharges of Cs remained in the coastal zone 2–3 months after the accident. We used a short-lived Ra isotope (223Ra, t1/2 = 11.4 d) to derive an average water mass age (Tr) in the coastal zone of 32 days. To ground-truth the Ra age model, we conducted a direct, station-by-station comparison of water mass ages with a numerical oceanographic model and found them to be in excellent agreement (model avg. Tr = 27 days). From these independent Tr values and the inventory of Cs within the water column at the time of our cruise, we were able to calculate an offshore 134Cs flux of 3.9–4.6 × 1013 Bq d−1. Radium-228 (t1/2 = 5.75 yr) was used to derive a vertical eddy diffusivity (Kz) of 0.7 m2 d−1 (0.1 cm2 s−1); from this Kz and 134Cs inventory, we estimated a 134Cs flux across the pycnocline of 1.8 × 104 Bq d−1 for the same time period. On average, our results show that horizontal mixing loss of Cs from the coastal zone was ~ 109 greater than vertical exchange below the surface mixed layer. Finally, a mixing/dilution model that utilized our Ra-based and oceanographic model water mass ages produced a direct ocean discharge of 134Cs from the FNPP of 11–16 PBq at the time of the peak release in early April 2011. Our results can be used to calculate discharge of other water-soluble radionuclides that were released to the ocean directly from the Fukushima NPP.The authors thank the Gordon and Betty Moore Foundation for funding this effort

Guidance note on the application of coastal monitoring for small island developing states : Part of the NOC-led project “Climate Change Impact Assessment: Ocean Modelling and Monitoring for the Caribbean CME states”, 2017-2020; under the Commonwealth Marine Economies (CME) Programme in the Caribbean.

Small Island Developing States (SIDS) are a diverse group of 51 countries and territories vulnerable to human-induced climate change, due to factors including their small size, large exclusive economic zones and limited resources. They generally have insufficient critical mass in scientific research and technical capability to carry out coastal monitoring campaigns from scratch and limited access to data. This guidance report will go some way to addressing these issues by providing information on monitoring methods and signposting data sources. Coastal monitoring, the collection, analysis and storage of information about coastal processes and the response of the coastline, provides information on how the coast changes over time, after storm events and due to the effects of human intervention. Accurate and repeatable observational data is essential to informed decision making, particularly in light of climate change, the impacts of which are already being felt. In this report, we review the need for monitoring and the development of appropriate strategies, which include good baseline data and long-term repeatable data collection at appropriate timescales. We identify some of the methods for collection of in situ data, such as tide gauges and topographic survey, and highlight where resources in terms of data and equipment are currently available. We then go on to explore the range of remote sensing methods available from satellites to smart phone photography. Both in situ and remotely sensed data are important as inputs into models, which in turn feed in to visualisations for decision-making. We review the availability of a wide range of datasets, including details of how to access satellite data and links to international and regional data banks. The report concludes with information on the use of Geographical Information Systems (GIS) and good practice in managing data

Nearshore and inner shelf sedimentation on the east Coromandel coast, New Zealand

The east Coromandel coastline on the northeast coast of New Zealand has been characterised by localised erosion problems since its commercial subdivision. Increasing pressures have also arisen in recent years for possible use of the adjacent continental shelf as a repository for dredge and mining tailings, and extraction of commercial aggregate and mineral deposits. This has raised the question of dynamic links between the continental shelf and local beach systems I and resulting impacts on the coastline from such activities. The east Coromandel shelf study was therefore undertaken to investigate the modern and past shelf sedimentation processes, and relate these findings to local resource management issues. The results also contribute to the present international understanding of inner shelf sedimentation processes in 'storm-dominated' shelf environments. Surficial sedimentation patterns have been examined by a variety of methods, including: the use of sea-bed drifters and Aanderaa current meters to determine the shelf hydrodynamics; the collection of 563 samples to determine surface sediment textural patterns; a detailed examination of morphological features on the sea floor through a series of 3 side-scan sonar surveys in which 620 km of sonograph and echosounding trace have been obtained; diver surveys using depth of activity rods to provide information on the mobility of surface sediments under different sea conditions; the collection, of 174 km of continuous sub-bottom seismic profiles which have been used to determine sub-surface stratigraphic patterns; and an examination of the provenance of shelf sediments through a detailed examination of their light and heavy mineralogy. The east Coromandel coast is located on an active plate margin, resulting in the presence of a steep and rocky coastline fronted by a relatively narrow continental shelf (20 to 30 km wide), and a local geology dominated by Tertiary volcanics covered by a thin veneer of more recent volcanic air fall deposits. It is also located on a lee shelf in a mid-latitude zone of dominant westerly winds, with these prevailing weather patterns disrupted by high speed east to northeasterly winds associated with the infrequent passage of subtropical low pressure systems, occluded fronts, or more infrequent decaying tropical cyclones. This physiographic setting results in spatially and temporally highly variable sedimentation patterns, with sediment transport primarily controlled by the interaction of wave oscillatory and wind-generated currents during storm conditions. However, characteristics of tide-. and oceanic current-dominated conditions also occur in some areas. And conditions generally vary along the coast from being higher energy (current-dominated) on the southern exposed coast, to lower energy (wave- or current-dominated) on the northern embayed coastline. Shelf sedimentation is inferred to occur under three different scale events of fair weather, storm, and extreme storm conditions. The model proposed involves extreme storm conditions transporting large quantities of fine nearshore sands seawards onto the inner shelf surface, where they are slowly reworked along the shelf during annual storm events and back onshore during fair weather conditions. This latter onshore return of fine sands is proposed to result from an enhanced shear stress effect of long-period swell waves over coarse megarippled inner shelf sands. Shelf sedimentation patterns within the study area are inferred to have been primarily established by processes occurring at about the time sea level stabitised 6500 years B.P. At this stage, transgressive shelf sediments were reworked into equilibrium with the regional oceanographic conditions by the winnowing of fine sand from coarser material during storms, with the fine sands subsequently transported onshore by wave-induced currents during calm periods. Depending on the volume of sediments incorporated into transgressive sand bodies and the local shelf gradients, each embayment then developed into either an integral part of the shelf transport system (usually off large estuary systems), with fine shelf sands moving onshore and forming wide barrier spits, or a closed sedimentary system unaffected by shelf sedimentation patterns (pocket embayments). Shelf equilibrium was evidently attained by the fine sands forming a steep seaward dipping concave-up nearshore profile, and coarse sands developing a flatter inner shelf profile. An autochthonous mode of shelf sedimentation characterised the east Coromandel coast in early Holocene times, and is still evident under present conditions in most areas by the cyclical reworking of fine sands between the lower nearshore and inner shelf surfaces. Most east Coromandel embayments are, however, presently characterised by varying degrees of an allochthonous mode of shelf sedimentation. This involves the deposition of very fine grained, volcanic glass-enriched terrigenous sands, which are derived from either local catchments or Bay of Plenty river systems. The east Coromandel coast generally differs from most allochthonous shelf environments because the supply of terrigenous sediments has not as yet been sufficient to blanket the lower nearshore and inner shelf surfaces on the open ocean coastlines. Two separate modes of shelf sedimentation occur at present, with a nearshore inner shelf recycling of fine allochthonous shelf sands, and an open exchange of terrestrial autochthonous deposits from the upper nearshore surface to the mid shelf plain. The results of the study suggest that coastal erosion problems can largely be resolved by establishing stable incipient and frontal dune systems along the coast. and encouraging accretion by renourishment from adjacent infilling harbour deposits. The study has also shown that the dispersion of dredged sediments provides potential benefits to the coast in terms of promoting beach accretion, and that sand and mineral extraction can proceed without adverse coastal erosion effects, provided the extraction does not interfere with the natural shelf sedimentation system

From stable isotope ecology to forensic isotope ecology: isotopes' tales.

Stable isotope ecology and forensic isotope ecology are not only linked by name. More often than not, knowledge and insights gained through the former serve as a springboard for application focused work of the latter. This review aims to offer a glimpse into the fascinating world of both though with more emphasis on forensic isotope ecology. To this end a selection of past and recent published work is presented and discussed to highlight both potential and limitations of isotopic analytical approaches to the detection of illegal trade in plants and animals

Dead cetacean? beach, bloat, float, sink

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Moore, M. J., Mitchell, G. H., Rowles, T. K., & Early, G. Dead cetacean? beach, bloat, float, sink. Frontiers in Marine Science, 7, (2020): 333, doi:10.3389/fmars.2020.00333.Variably buoyant, dead Cetacea may float, or sink and later bloat to refloat if ambient temperature and pressure allow sufficient decomposition gas formation and expansion. Mortality can result from acute or chronic disease, fishery entanglement, vessel collision, noxious noises, or toxicant spills. Investigators often face the daunting task of elucidating a complex series of events, in reverse order, from when and where an animal is found, and to diagnose the cause of death. Various scenarios are possible: an animal could die at sea remaining there or floating ashore, or strand on a beach alive, where it dies and, if cast high enough, remain beached to be scavenged or decompose. An animal that rests low on a beach may refloat again, through increased buoyancy from decomposition gas and favorable tides, currents, and wind. Here we review the factors responsible for the different outcomes, and how to recognize the provenance of a cetacean mortality found beached, or floating at sea. In conclusion, only some carcasses strand, or remain floating. Negatively buoyant animals that die at depth, or on the surface, and sink, may never surface, even after decomposition gas accumulation, as in cold, deep waters gas may fail to adequately reduce the density of a carcass, precluding it from returning to the surface

Remote Sensing of Earth Resources (1970 - 1973 supplement): A literature survey with indexes. Section 2: Indexes

Documents related to the identification and evaluation by means of sensors in spacecraft and aircraft of vegetation, minerals, and other natural resources, and the techniques and potentialities of surveying and keeping up-to-date inventories of such riches are cited. These documents were announced in the NASA scientific and technical information system between March 1970 and December 1973