688 research outputs found

    Surface-Enhanced Spectroelectrochemistry using Synchrotron Infrared Radiation

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    Electrochemical reactions are inherently heterogeneous, occurring at the interface between a solid electrode and an electrolyte solution. Therefore, detailed mechanistic understanding requires the electrode/solution interface (ESI) to be interrogated. Doing so with spectroelectrochemical techniques generally encounters several analytical challenges. Sampling the ESI requires a surface-sensitive spectroscopy capable of addressing a buried interface, placing strong limitations on photon energy and spectroelectrochemical cell design. Furthermore, dynamic measurements are fundamentally limited by the finite rise time of the electrode. For many important processes with characteristic timescales in the milli- to microsecond regime, achieving a suitably low rise time requires the use of an electrode with critical dimensions in the hundreds of micrometers, i.e. a microelectrode. In this thesis, I develop the spectroscopic platform necessary to perform surface-sensitive, time-resolved infrared measurements in the milli- to microsecond regime. I will make the case that an infrared spectroelectrochemical technique, namely attenuated total reflectance surface-enhanced infrared absorption spectroscopy (ATR-SEIRAS), is applicable because it is intrinsically surface-sensitive, yields detailed information on molecular structure, and is compatible with a range of electrocatalytic metals. I will show that the small size of the microelectrode requires an unconventional infrared source, namely highly focused synchrotron radiation. This thesis will present the characterization of a new internal reflection element which is fully compatible with ATR-SEIRAS and easily amenable to microfabrication. A custom horizontal microscope endstation will be developed at the mid-IR beamline at the Canadian Light Source. Its general utility beyond the primary goal of this thesis will be demonstrated with imaging experiments of a simple interfacial reaction in a microfluidic device. Finally, a 500 micrometer wide linear microelectrode compatible with ATR-SEIRAS will be fabricated and preliminary kinetic measurements of a model electrochemical process, namely the potential-induced desorption of 4-methoxypyridine, will be discussed

    Multimodal microscopy in mid-infrared via flexible pulse shaping

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    In this thesis, mid-infrared (MIR) pulses with arbitrary temporal and spectral shape are generated via a difference-frequency process for application in a non-linear Raman microscope. Solely by shaping the sub 10 fs driving pulses, the broadband spectra of the MIR pulses are switched to narrowband and tuneable ones. In MIR transmission spectroscopy, these narrowband MIR spectra allow for investigating molecular vibrations from 1250 to 3250 cm-1 with spectral resolutions below 20 cm-1. Furthermore, MIR transmission microspectroscopy is combined with coherent-anti-Stokes Raman scattering (CARS) to provide a direct comparison of spectra and images obtained in one spot of the sample. Sum-frequency (SF) microspectroscopy is an additional technique, which complements the toolbox of this non-linear Raman microscope with the potential to investigate non-centrosymmetric systems. The flexibility of the pulse shaper allows for implementing two different SF-methods. Whereas the heterodyne multiplex method acquires the whole SF spectrum by imprinting only three different phase functions, the homodyne MIR-scanning method generates a high SF intensity directly linked to one vibrational mode. In all applications, the phase of MIR pulses must be well-known. This phase is determined in the focal plane of the microscope over more than 1000 cm-1 via two methods based on the dispersion-scan

    Ft-ir Microspectroscopy Of Rat Ear Cartilage

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    Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Rat ear cartilage was studied using Fourier transform-infrared (FT-IR) microspectroscopy to expand the current knowledge which has been established for relatively more complex cartilage types. Comparison of the FT-IR spectra of the ear cartilage extracellular matrix (ECM) with published data on articular cartilage, collagen II and 4-chondroitin-sulfate standards, as well as of collagen type I-containing dermal collagen bundles (CBs) with collagen type II, was performed. Ear cartilage ECM glycosaminoglycans (GAGs) were revealed histochemically and as a reduction in ECM FT-IR spectral band heights (1140-820 cm(-1)) after testicular hyaluronidase digestion. Although ear cartilage is less complex than articular cartilage, it contains ECM components with a macromolecular orientation as revealed using polarization microscopy. Collagen type II and GAGs, which play a structural role in the stereo-arrangement of the ear cartilage, contribute to its FT-IR spectrum. Similar to articular cartilage, ear cartilage showed that proteoglycans add a contribution to the collagen amide I spectral region, a finding that does not recommend this region for collagen type II quantification purposes. In contrast to articular cartilage, the symmetric stretching vibration of -SO3- groups at 1064 cm-1 appeared under-represented in the FT-IR spectral profile of ear cartilage. Because the band corresponding to the asymmetric stretching vibration of -SO3- groups (1236-1225 cm(-1)) overlapped with that of amide III bands, it is not recommended for evaluation of the -SO3--contribution to the FT-IR spectrum of the ear cartilage ECM. Instead, a peak (or shoulder) at 1027-1016 cm(-1) could be better considered for this intent. Amide I/amide II ratios as calculated here and data from the literature suggest that protein complexes of the ear cartilage ECM are arranged with a lower helical conformation compared to pure collagen II. The present results could motivate further studies on this tissue under pathological or experimental states involving ear cartilage.11Fundacao de Amparo a Pesquisa do Estado de Sao Paulo [2003/04597-0, 2007/058251-8, 2013/1078-0]Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP

    Deformation Behavior of Foam Laser Targets Fabricated by Two-Photon Polymerization

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    Two-photon polymerization (2PP), which is a three-dimensional micro/nano-scale additive manufacturing process, is used to fabricate component for small custom experimental packages (“targets”) to support laser-driven, high-energy-density physics research. Of particular interest is the use of 2PP to deterministically print millimeter-scale, low-density, and low atomic number (CHO) polymer matrices (“foams”). Deformation during development and drying of the foam structures remains a challenge when using certain commercial acrylic photo-resins. Acrylic resins were chosen in order to meet the low atomic number requirement for the foam; that requirement precludes the use of low-shrinkage organic/inorganic hybrid resins. Here, we compare the use of acrylic resins IP-S and IP-Dip. Infrared and Raman spectroscopy are used to quantify the extent of the polymerization during 2PP vs. UV curing. The mechanical strength of beam and foam structures is examined, particularly the degree of deformation that occurs during the development and drying processes. The magnitude of the shrinkage is quantified, and finite element analysis is used in order to simulate the resulting deformation. Capillary drying forces during development are shown to be small and are likely below the elastic limit of the foam log-pile structures. In contrast, the substantial shrinkage in IP-Dip (~5–10%) causes large shear stresses and associated plastic deformation, particularly near constrained boundaries and locations with sharp density transitions. Use of IP-S with an improved writing procedure results in a marked reduction in deformation with a minor loss of resolution

    Simulation of Dislocation in Cosserat Elastic Plates

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    In this article we present the numerical simulation of a dislocation incorporated into a Cosserat plate. The simulation is based on the mathematical model for bending of Cosserat elastic plates recently developed by the authors. The dislocation is modeled by a sequence of domains that converge to the point of the dislocation and by a residual force distributed around that point. The resulted plate deformation is calculated using the Finite Element method. We also discuss a possible effect of the dislocation on a hole incorporated into the plate.Comment: arXiv admin note: substantial text overlap with arXiv:1804.0729

    Combining Pharmacokinetics and Vibrational Spectroscopy: MCR-ALS Hard-and-Soft Modelling of Drug Uptake In Vitro Using Tailored Kinetic Constraints

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    Raman microspectroscopy is a label-free technique which is very suited for the investigation of pharmacokinetics of cellular uptake, mechanisms of interaction, and efficacies of drugs in vitro. However, the complexity of the spectra makes the identification of spectral patterns associated with the drug and subsequent cellular responses difficult. Indeed, multivariate methods that relate spectral features to the inoculation time do not normally take into account the kinetics involved, and important theoretical information which could assist in the elucidation of the relevant spectral signatures is excluded. Here, we propose the integration of kinetic equations in the modelling of drug uptake and subsequent cellular responses using Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) and tailored kinetic constraints, based on a system of ordinary differential equations. Advantages of and challenges to the methodology were evaluated using simulated Raman spectral data sets and real Raman spectra acquired from A549 and Calu-1 human lung cells inoculated with doxorubicin, in vitro. The results suggest a dependency of the outcome on the system of equations used, and the importance of the temporal resolution of the data set to enable the use of complex equations. Nevertheless, the use of tailored kinetic constraints during MCR-ALS allowed a more comprehensive modelling of the system, enabling the elucidation of not only the time-dependent concentration profiles and spectral features of the drug binding and cellular responses, but also an accurate computation of the kinetic constants

    Infrared attenuated total reflection spectroscopy for monitoring biological systems

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    Mid-infrared (MIR) spectroscopy has been recognized as an important analytical technique, and is widely applied for qualitative and quantitative analysis of materials with an increasing interest in addressing complex organic or biologic constituents. In the presented thesis, (a) the fundamental principles for IR spectroscopic applications via in vivo catheters in combination with multivariate data analysis technique were developed, and (b) the combination with a second analytical technique ¨C scanning electrochemical microscopy (SECM) - for enhancing the information obtained at complex or frequently changing matrices was demonstrated. The first part of this thesis focused on the combination of different MIR measurment techniques with specific focus on evanescent field absorption spectroscopy along with multivariate data analysis methods, for the discrimination of atherosclerotic and normal rabbit aorta tissues. Atherosclerotic and normal rabbit aorta tissues are characterized by marked differences in chemical composition governed by their water, lipid, and protein content. Strongly overlapping infrared absorption features of the different constituents and the complexity of the tissue matrix render the direct evaluation of molecular spectroscopic characteristics obtained from IR measurements challenging for classification. We have successfully applied multivariate data analysis and classification techniques based on principal component analysis (PCA), partial least squares regression (PLS), and linear discriminant analysis (LDA) to IR spectroscopic data obtained by infrared attenuated total reflectance (IR-ATR) measurements, reflection IR microscopy, and a recently developed IR-ATR catheter prototype for future in vivo diagnostic applications. Training and test data were collected ex vivo at atherosclerotic and normal rabbit aorta samples. The successful classification results at atherosclerotic and normal aorta samples utilizing the developed data evaluation routines reveals the potential of IR spectroscopy combined with multivariate classification strategies for in vitro, and ¨C in future - in vivo applications. The second part of this thesis aimed at the development of a novel multifunctional analytical platform by combining SECM with single-bounce IR-ATR spectroscopy for in situ studies of electrochemically active or electrochemically induced processes at the IR waveguide surface via simultaneous evanescent field absorption spectroscopy. The utility of the developed SECM-IR-ATR platform was demonstrated by spectroscopically monitoring microstructured polymer depositions induced via feedback mode SECM experiments using a 25μm Pt disk ultramicroelectrode (UME). The surface of a ZnSe ATR crystal was coated with a thin layer of 2,5-di-(2-thienyl)-pyrrole (SNS), which was then polymerized in a Ru(bpy) ₃ ² ⁺-mediated feedback mode SECM experiment. The polymerization reaction was simultaneously spectroscopically monitored by recording the absorption intensity changes of specific IR bands characteristic for SNS, thereby providing information on the polymerization progress, mechanism, and level of surface modification. Furthermore, a novel current-independent approach mechanism for positioning the UME in aqueous electrolyte solution was demonstrated by monitoring IR absorption changes of borosilicate glass (BSG) shielding the UME, and of water within the penetration depth of the evanescent field.Ph.D.Committee Chair: Mizaikoff, Boris; Committee Member: Fernandez, Facundo; Committee Member: Orlando, Thomas; Committee Member: Palmer. Richard; Committee Member: Whetten, Rober
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