State Elimination Ordering Strategies: Some Experimental Results

Recently, the problem of obtaining a short regular expression equivalent to a given finite automaton has been intensively investigated. Algorithms for converting finite automata to regular expressions have an exponential blow-up in the worst-case. To overcome this, simple heuristic methods have been proposed. In this paper we analyse some of the heuristics presented in the literature and propose new ones. We also present some experimental comparative results based on uniform random generated deterministic finite automata.Comment: In Proceedings DCFS 2010, arXiv:1008.127

Regular Combinators for String Transformations

We focus on (partial) functions that map input strings to a monoid such as the set of integers with addition and the set of output strings with concatenation. The notion of regularity for such functions has been defined using two-way finite-state transducers, (one-way) cost register automata, and MSO-definable graph transformations. In this paper, we give an algebraic and machine-independent characterization of this class analogous to the definition of regular languages by regular expressions. When the monoid is commutative, we prove that every regular function can be constructed from constant functions using the combinators of choice, split sum, and iterated sum, that are analogs of union, concatenation, and Kleene-*, respectively, but enforce unique (or unambiguous) parsing. Our main result is for the general case of non-commutative monoids, which is of particular interest for capturing regular string-to-string transformations for document processing. We prove that the following additional combinators suffice for constructing all regular functions: (1) the left-additive versions of split sum and iterated sum, which allow transformations such as string reversal; (2) sum of functions, which allows transformations such as copying of strings; and (3) function composition, or alternatively, a new concept of chained sum, which allows output values from adjacent blocks to mix.Comment: This is the full version, with omitted proofs and constructions, of the conference paper currently in submissio

Small NFAs from Regular Expressions: Some Experimental Results

Regular expressions (res), because of their succinctness and clear syntax, are the common choice to represent regular languages. However, efficient pattern matching or word recognition depend on the size of the equivalent nondeterministic finite automata (NFA). We present the implementation of several algorithms for constructing small epsilon-free NFAss from res within the FAdo system, and a comparison of regular expression measures and NFA sizes based on experimental results obtained from uniform random generated res. For this analysis, nonredundant res and reduced res in star normal form were considered.Comment: Proceedings of 6th Conference on Computability in Europe (CIE 2010), pages 194-203, Ponta Delgada, Azores, Portugal, June/July 201

Parametrized Stochastic Grammars for RNA Secondary Structure Prediction

We propose a two-level stochastic context-free grammar (SCFG) architecture for parametrized stochastic modeling of a family of RNA sequences, including their secondary structure. A stochastic model of this type can be used for maximum a posteriori estimation of the secondary structure of any new sequence in the family. The proposed SCFG architecture models RNA subsequences comprising paired bases as stochastically weighted Dyck-language words, i.e., as weighted balanced-parenthesis expressions. The length of each run of unpaired bases, forming a loop or a bulge, is taken to have a phase-type distribution: that of the hitting time in a finite-state Markov chain. Without loss of generality, each such Markov chain can be taken to have a bounded complexity. The scheme yields an overall family SCFG with a manageable number of parameters.Comment: 5 pages, submitted to the 2007 Information Theory and Applications Workshop (ITA 2007

From Finite Automata to Regular Expressions and Back--A Summary on Descriptional Complexity

The equivalence of finite automata and regular expressions dates back to the seminal paper of Kleene on events in nerve nets and finite automata from 1956. In the present paper we tour a fragment of the literature and summarize results on upper and lower bounds on the conversion of finite automata to regular expressions and vice versa. We also briefly recall the known bounds for the removal of spontaneous transitions (epsilon-transitions) on non-epsilon-free nondeterministic devices. Moreover, we report on recent results on the average case descriptional complexity bounds for the conversion of regular expressions to finite automata and brand new developments on the state elimination algorithm that converts finite automata to regular expressions.Comment: In Proceedings AFL 2014, arXiv:1405.527