715,186 research outputs found

    Genetic noise control via protein oligomerization

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    Gene expression in a cell entails random reaction events occurring over disparate time scales. Thus, molecular noise that often results in phenotypic and population-dynamic consequences sets a fundamental limit to biochemical signaling. While there have been numerous studies correlating the architecture of cellular reaction networks with noise tolerance, only a limited effort has been made to understand the dynamic role of protein-protein interactions. Here we have developed a fully stochastic model for the positive feedback control of a single gene, as well as a pair of genes (toggle switch), integrating quantitative results from previous in vivo and in vitro studies. We find that the overall noise-level is reduced and the frequency content of the noise is dramatically shifted to the physiologically irrelevant high-frequency regime in the presence of protein dimerization. This is independent of the choice of monomer or dimer as transcription factor and persists throughout the multiple model topologies considered. For the toggle switch, we additionally find that the presence of a protein dimer, either homodimer or heterodimer, may significantly reduce its random switching rate. Hence, the dimer promotes the robust function of bistable switches by preventing the uninduced (induced) state from randomly being induced (uninduced). The specific binding between regulatory proteins provides a buffer that may prevent the propagation of fluctuations in genetic activity. The capacity of the buffer is a non-monotonic function of association-dissociation rates. Since the protein oligomerization per se does not require extra protein components to be expressed, it provides a basis for the rapid control of intrinsic or extrinsic noise

    Shot-noise-limited control-loop noise in an interferometer with multiple degrees of freedom

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    Precise measurements, such as those made with interferometric gravitational-wave detectors, require the measurement device to be properly controlled so that the sensitivity can be as high as possible. Mirrors in the interferometer are to be located at specific operation points to isolate laser noise and to accumulate the signal in resonant cavities. On the other hand, rigid control of an auxiliary degree of freedom may result in imposing sensing noise of the control on the target object as excess force noise. Evaluation of this so-called loop noise is important in order to design a decent control scheme of the measurement device. In this paper, we show the method to calculate the level of loop noise, which has been recently implemented in simulation tools that are broadly used for designing gravitational-wave detectors
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