Node-Type-Based Load-Balancing Routing for Parallel Generalized Fat-Trees

High-Performance Computing (HPC) clusters are made up of a variety of node types (usually compute, I/O, service, and GPGPU nodes) and applications don't use nodes of a different type the same way. Resulting communication patterns reflect organization of groups of nodes, and current optimal routing algorithms for all-to-all patterns will not always maximize performance for group-specific communications. Since application communication patterns are rarely available beforehand, we choose to rely on node types as a good guess for node usage. We provide a description of node type heterogeneity and analyse performance degradation caused by unlucky repartition of nodes of the same type. We provide an extension to routing algorithms for Parallel Generalized Fat-Tree topologies (PGFTs) which balances load amongst groups of nodes of the same type. We show how it removes these performance issues by comparing results in a variety of situations against corresponding classical algorithms

High-Quality Fault-Resiliency in Fat-Tree Networks (Extended Abstract)

Coupling regular topologies with optimized routing algorithms is key in pushing the performance of interconnection networks of HPC systems. In this paper we present Dmodc, a fast deterministic routing algorithm for Parallel Generalized Fat-Trees (PGFTs) which minimizes congestion risk even under massive topology degradation caused by equipment failure. It applies a modulo-based computation of forwarding tables among switches closer to the destination, using only knowledge of subtrees for pre-modulo division. Dmodc allows complete rerouting of topologies with tens of thousands of nodes in less than a second, which greatly helps centralized fabric management react to faults with high-quality routing tables and no impact to running applications in current and future very large-scale HPC clusters. We compare Dmodc against routing algorithms available in the InfiniBand control software (OpenSM) first for routing execution time to show feasibility at scale, and then for congestion risk under degradation to demonstrate robustness. The latter comparison is done using static analysis of routing tables under random permutation (RP), shift permutation (SP) and all-to-all (A2A) traffic patterns. Results for Dmodc show A2A and RP congestion risks similar under heavy degradation as the most stable algorithms compared, and near-optimal SP congestion risk up to 1% of random degradation

Routing on the Channel Dependency Graph:: A New Approach to Deadlock-Free, Destination-Based, High-Performance Routing for Lossless Interconnection Networks

In the pursuit for ever-increasing compute power, and with Moore's law slowly coming to an end, high-performance computing started to scale-out to larger systems. Alongside the increasing system size, the interconnection network is growing to accommodate and connect tens of thousands of compute nodes. These networks have a large influence on total cost, application performance, energy consumption, and overall system efficiency of the supercomputer. Unfortunately, state-of-the-art routing algorithms, which define the packet paths through the network, do not utilize this important resource efficiently. Topology-aware routing algorithms become increasingly inapplicable, due to irregular topologies, which either are irregular by design, or most often a result of hardware failures. Exchanging faulty network components potentially requires whole system downtime further increasing the cost of the failure. This management approach becomes more and more impractical due to the scale of today's networks and the accompanying steady decrease of the mean time between failures. Alternative methods of operating and maintaining these high-performance interconnects, both in terms of hardware- and software-management, are necessary to mitigate negative effects experienced by scientific applications executed on the supercomputer. However, existing topology-agnostic routing algorithms either suffer from poor load balancing or are not bounded in the number of virtual channels needed to resolve deadlocks in the routing tables. Using the fail-in-place strategy, a well-established method for storage systems to repair only critical component failures, is a feasible solution for current and future HPC interconnects as well as other large-scale installations such as data center networks. Although, an appropriate combination of topology and routing algorithm is required to minimize the throughput degradation for the entire system. This thesis contributes a network simulation toolchain to facilitate the process of finding a suitable combination, either during system design or while it is in operation. On top of this foundation, a key contribution is a novel scheduling-aware routing, which reduces fault-induced throughput degradation while improving overall network utilization. The scheduling-aware routing performs frequent property preserving routing updates to optimize the path balancing for simultaneously running batch jobs. The increased deployment of lossless interconnection networks, in conjunction with fail-in-place modes of operation and topology-agnostic, scheduling-aware routing algorithms, necessitates new solutions to solve the routing-deadlock problem. Therefore, this thesis further advances the state-of-the-art by introducing a novel concept of routing on the channel dependency graph, which allows the design of an universally applicable destination-based routing capable of optimizing the path balancing without exceeding a given number of virtual channels, which are a common hardware limitation. This disruptive innovation enables implicit deadlock-avoidance during path calculation, instead of solving both problems separately as all previous solutions

Routing algorithms for recursively-defined data centre networks

The server-centric data centre network architecture can accommodate a wide variety of network topologies. Newly proposed topologies in this arena often require several rounds of analysis and experimentation in order that they might achieve their full potential as data centre networks. We propose a family of novel routing algorithms on two well-known data centre networks of this type, (Generalized) DCell and FiConn, using techniques that can be applied more generally to the class of networks we call completely connected recursively-defined networks. In doing so, we develop a classification of all possible routes from server-node to server-node on these networks, called general routes of order t, and find that for certain topologies of interest, our routing algorithms efficiently produce paths that are up to 16% shorter than the best previously known algorithms, and are comparable to shortest paths. In addition to finding shorter paths, we show evidence that our algorithms also have good load-balancing properties

High-Performance, Low-Complexity Deadlock Avoidance for Arbitrary Topologies/Routings

Recently, the use of graph-based network topologies has been proposed as an alternative to traditional networks such as tori or fat-trees due to their very good topological characteristics. However they pose practical implementation challenges such as the lack of deadlock avoidance strategies. Previous proposals are either exceedingly complex, underutilise network resources or lack flexibility. We propose- and prove formally- three generic, low-complexity dead-lock avoidance mechanisms that only require local information. The main strengths of our method are its topology- and routing- independence and that the virtual channel count is bounded by the length of the longest path. We evaluate our proposed mechanisms against previous proposals through an extensive simulation study to measure the impact on the performance using both synthetic and realistic traffic. First we compare against a well-known HPC mechanism for dragonfly and achieved similar performance level. Then we moved to Graph-based networks and show that our mechanisms can greatly outperform traditional, spanning-tree based mechanisms, even if these use a much larger number of virtual channels. Overall, we find that our proposal provides a simple, flexible and high performance deadlock-avoidance solution

Configurable data center switch architectures

In this thesis, we explore alternative architectures for implementing con_gurable Data Center Switches along with the advantages that can be provided by such switches. Our first contribution centers around determining switch architectures that can be implemented on Field Programmable Gate Array (FPGA) to provide configurable switching protocols. In the process, we identify a gap in the availability of frameworks to realistically evaluate the performance of switch architectures in data centers and contribute a simulation framework that relies on realistic data center traffic patterns. Our framework is then used to evaluate the performance of currently existing as well as newly proposed FPGA-amenable switch designs. Through collaborative work with Meng and Papaphilippou, we establish that only small-medium range switches can be implemented on today's FPGAs. Our second contribution is a novel switch architecture that integrates a custom in-network hardware accelerator with a generic switch to accelerate Deep Neural Network training applications in data centers. Our proposed accelerator architecture is prototyped on an FPGA, and a scalability study is conducted to demonstrate the trade-offs of an FPGA implementation when compared to an ASIC implementation. In addition to the hardware prototype, we contribute a light weight load-balancing and congestion control protocol that leverages the unique communication patterns of ML data-parallel jobs to enable fair sharing of network resources across different jobs. Our large-scale simulations demonstrate the ability of our novel switch architecture and light weight congestion control protocol to both accelerate the training time of machine learning jobs by up to 1.34x and benefit other latency-sensitive applications by reducing their 99%-tile completion time by up to 4.5x. As for our final contribution, we identify the main requirements of in-network applications and propose a Network-on-Chip (NoC)-based architecture for supporting a heterogeneous set of applications. Observing the lack of tools to support such research, we provide a tool that can be used to evaluate NoC-based switch architectures.Open Acces

Asymptotically Optimal Approximation Algorithms for Coflow Scheduling

Many modern datacenter applications involve large-scale computations composed of multiple data flows that need to be completed over a shared set of distributed resources. Such a computation completes when all of its flows complete. A useful abstraction for modeling such scenarios is a {\em coflow}, which is a collection of flows (e.g., tasks, packets, data transmissions) that all share the same performance goal. In this paper, we present the first approximation algorithms for scheduling coflows over general network topologies with the objective of minimizing total weighted completion time. We consider two different models for coflows based on the nature of individual flows: circuits, and packets. We design constant-factor polynomial-time approximation algorithms for scheduling packet-based coflows with or without given flow paths, and circuit-based coflows with given flow paths. Furthermore, we give an $O(\log n/\log \log n)$-approximation polynomial time algorithm for scheduling circuit-based coflows where flow paths are not given (here $n$ is the number of network edges). We obtain our results by developing a general framework for coflow schedules, based on interval-indexed linear programs, which may extend to other coflow models and objective functions and may also yield improved approximation bounds for specific network scenarios. We also present an experimental evaluation of our approach for circuit-based coflows that show a performance improvement of at least 22% on average over competing heuristics.Comment: Fixed minor typo

Automating Topology Aware Mapping for Supercomputers

Petascale machines with hundreds of thousands of cores are being built. These machines have varying interconnect topologies and large network diameters. Computation is cheap and communication on the network is becoming the bottleneck for scaling of parallel applications. Network contention, specifically, is becoming an increasingly important factor affecting overall performance. The broad goal of this dissertation is performance optimization of parallel applications through reduction of network contention. Most parallel applications have a certain communication topology. Mapping of tasks in a parallel application based on their communication graph, to the physical processors on a machine can potentially lead to performance improvements. Mapping of the communication graph for an application on to the interconnect topology of a machine while trying to localize communication is the research problem under consideration. The farther different messages travel on the network, greater is the chance of resource sharing between messages. This can create contention on the network for networks commonly used today. Evaluative studies in this dissertation show that on IBM Blue Gene and Cray XT machines, message latencies can be severely affected under contention. Realizing this fact, application developers have started paying attention to the mapping of tasks to physical processors to minimize contention. Placement of communicating tasks on nearby physical processors can minimize the distance traveled by messages and reduce the chances of contention. Performance improvements through topology aware placement for applications such as NAMD and OpenAtom are used to motivate this work. Building on these ideas, the dissertation proposes algorithms and techniques for automatic mapping of parallel applications to relieve the application developers of this burden. The effect of contention on message latencies is studied in depth to guide the design of mapping algorithms. The hop-bytes metric is proposed for the evaluation of mapping algorithms as a better metric than the previously used maximum dilation metric. The main focus of this dissertation is on developing topology aware mapping algorithms for parallel applications with regular and irregular communication patterns. The automatic mapping framework is a suite of such algorithms with capabilities to choose the best mapping for a problem with a given communication graph. The dissertation also briefly discusses completely distributed mapping techniques which will be imperative for machines of the future.published or submitted for publicationnot peer reviewe