71 research outputs found

    On parameterized deformations and unsupervised learning

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    Geometric gradient-flow dynamics with singular solutions

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    The gradient-flow dynamics of an arbitrary geometric quantity is derived using a generalization of Darcy's Law. We consider flows in both Lagrangian and Eulerian formulations. The Lagrangian formulation includes a dissipative modification of fluid mechanics. Eulerian equations for self-organization of scalars, 1-forms and 2-forms are shown to reduce to nonlocal characteristic equations. We identify singular solutions of these equations corresponding to collapsed (clumped) states and discuss their evolution.Comment: 28 pages, 1 figure, to appear on Physica

    Averaged Lagrangians and the mean dynamical effects of fluctuations in continuum mechanics

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    We begin by placing the Generalized Lagrangian Mean (GLM) equations for a compressible adiabatic fluid into the Euler-Poincar\'e (EP) variational framework of fluid dynamics, for an averaged Lagrangian. We then derive a set of approximate small amplitude GLM equations (glm) that express the linear and nonlinear back-reaction effects on the Eulerian mean fluid quantities by the fluctuating displacements of the Lagrangian trajectories in terms of their Eulerian second moments. The new glm EP motion equations for compressible and incompressible ideal fluids are compared with the Euler-alpha turbulence closure equations. An alpha model is a GLM (or glm) fluid theory with a Taylor hypothesis closure (THC). The glm equations lead to generalizations of the Euler-alpha models to include compressibility and magnetic fields.Comment: 95 pages, no figures, submitted to Physica

    Doctor of Philosophy

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    dissertationThe statistical study of anatomy is one of the primary focuses of medical image analysis. It is well-established that the appropriate mathematical settings for such analyses are Riemannian manifolds and Lie group actions. Statistically defined atlases, in which a mean anatomical image is computed from a collection of static three-dimensional (3D) scans, have become commonplace. Within the past few decades, these efforts, which constitute the field of computational anatomy, have seen great success in enabling quantitative analysis. However, most of the analysis within computational anatomy has focused on collections of static images in population studies. The recent emergence of large-scale longitudinal imaging studies and four-dimensional (4D) imaging technology presents new opportunities for studying dynamic anatomical processes such as motion, growth, and degeneration. In order to make use of this new data, it is imperative that computational anatomy be extended with methods for the statistical analysis of longitudinal and dynamic medical imaging. In this dissertation, the deformable template framework is used for the development of 4D statistical shape analysis, with applications in motion analysis for individualized medicine and the study of growth and disease progression. A new method for estimating organ motion directly from raw imaging data is introduced and tested extensively. Polynomial regression, the staple of curve regression in Euclidean spaces, is extended to the setting of Riemannian manifolds. This polynomial regression framework enables rigorous statistical analysis of longitudinal imaging data. Finally, a new diffeomorphic model of irrotational shape change is presented. This new model presents striking practical advantages over standard diffeomorphic methods, while the study of this new space promises to illuminate aspects of the structure of the diffeomorphism group

    Proceedings of the First International Workshop on Mathematical Foundations of Computational Anatomy (MFCA'06) - Geometrical and Statistical Methods for Modelling Biological Shape Variability

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    International audienceNon-linear registration and shape analysis are well developed research topic in the medical image analysis community. There is nowadays a growing number of methods that can faithfully deal with the underlying biomechanical behaviour of intra-subject shape deformations. However, it is more difficult to relate the anatomical shape of different subjects. The goal of computational anatomy is to analyse and to statistically model this specific type of geometrical information. In the absence of any justified physical model, a natural attitude is to explore very general mathematical methods, for instance diffeomorphisms. However, working with such infinite dimensional space raises some deep computational and mathematical problems. In particular, one of the key problem is to do statistics. Likewise, modelling the variability of surfaces leads to rely on shape spaces that are much more complex than for curves. To cope with these, different methodological and computational frameworks have been proposed. The goal of the workshop was to foster interactions between researchers investigating the combination of geometry and statistics for modelling biological shape variability from image and surfaces. A special emphasis was put on theoretical developments, applications and results being welcomed as illustrations. Contributions were solicited in the following areas: * Riemannian and group theoretical methods on non-linear transformation spaces * Advanced statistics on deformations and shapes * Metrics for computational anatomy * Geometry and statistics of surfaces 26 submissions of very high quality were recieved and were reviewed by two members of the programm committee. 12 papers were finally selected for oral presentations and 8 for poster presentations. 16 of these papers are published in these proceedings, and 4 papers are published in the proceedings of MICCAI'06 (for copyright reasons, only extended abstracts are provided here)
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