What broke where for distributed and parallel applications — a whodunit story

Detection, diagnosis and mitigation of performance problems in today\u27s large-scale distributed and parallel systems is a difficult task. These large distributed and parallel systems are composed of various complex software and hardware components. When the system experiences some performance or correctness problem, developers struggle to understand the root cause of the problem and fix in a timely manner. In my thesis, I address these three components of the performance problems in computer systems. First, we focus on diagnosing performance problems in large-scale parallel applications running on supercomputers. We developed techniques to localize the performance problem for root-cause analysis. Parallel applications, most of which are complex scientific simulations running in supercomputers, can create up to millions of parallel tasks that run on different machines and communicate using the message passing paradigm. We developed a highly scalable and accurate automated debugging tool called PRODOMETER, which uses sophisticated algorithms to first, create a logical progress dependency graph of the tasks to highlight how the problem spread through the system manifesting as a system-wide performance issue. Second, uses this logical progress dependence graph to identify the task where the problem originated. Finally, PRODOMETER pinpoints the code region corresponding to the origin of the bug. Second, we developed a tool-chain that can detect performance anomaly using machine-learning techniques and can achieve very low false positive rate. Our input-aware performance anomaly detection system consists of a scalable data collection framework to collect performance related metrics from different granularity of code regions, an offline model creation and prediction-error characterization technique, and a threshold based anomaly-detection-engine for production runs. Our system requires few training runs and can handle unknown inputs and parameter combinations by dynamically calibrating the anomaly detection threshold according to the characteristics of the input data and the characteristics of the prediction-error of the models. Third, we developed performance problem mitigation scheme for erasure-coded distributed storage systems. Repair operations of the failed blocks in erasure-coded distributed storage system take really long time in networked constrained data-centers. The reason being, during the repair operation for erasure-coded distributed storage, a lot of data from multiple nodes are gathered into a single node and then a mathematical operation is performed to reconstruct the missing part. This process severely congests the links toward the destination where newly recreated data is to be hosted. We proposed a novel distributed repair technique, called Partial-Parallel-Repair (PPR) that performs this reconstruction in parallel on multiple nodes and eliminates network bottlenecks, and as a result, greatly speeds up the repair process. Fourth, we study how for a class of applications, performance can be improved (or performance problems can be mitigated) by selectively approximating some of the computations. For many applications, the main computation happens inside a loop that can be logically divided into a few temporal segments, we call phases. We found that while approximating the initial phases might severely degrade the quality of the results, approximating the computation for the later phases have very small impact on the final quality of the result. Based on this observation, we developed an optimization framework that for a given budget of quality-loss, would find the best approximation settings for each phase in the execution

Global repair bandwidth cost optimization of generalized regenerating codes in clustered distributed storage systems

In clustered distributed storage systems (CDSSs), one of the main design goals is minimizing the transmission cost during the failed storage nodes repairing. Generalized regenerating codes (GRCs) are proposed to balance the intra-cluster repair bandwidth and the inter-cluster repair bandwidth for guaranteeing data availability. The trade-off performance of GRCs illustrates that, it can reduce storage overhead and inter-cluster repair bandwidths simultaneously. However, in practical big data storage scenarios, GRCs cannot give an effective solution to handle the heterogeneity of bandwidth costs among different clusters for node failures recovery. This paper proposes an asymmetric bandwidth allocation strategy (ABAS) of GRCs for the inter-cluster repair in heterogeneous CDSSs. Furthermore, an upper bound of the achievable capacity of ABAS is derived based on the information flow graph (IFG), and the constraints of storage capacity and intra-cluster repair bandwidth are also elaborated. Then, a metric termed global repair bandwidth cost (GRBC), which can be minimized regarding of the inter-cluster repair bandwidths by solving a linear programming problem, is defined. The numerical results demonstrate that, maintaining the same data availability and storage overhead, the proposed ABAS of GRCs can effectively reduce the GRBC compared to the traditional symmetric bandwidth allocation schemes

Storing and managing data in a distributed hash table

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2008.Includes bibliographical references (p. 83-90).Distributed hash tables (DHTs) have been proposed as a generic, robust storage infrastructure for simplifying the construction of large-scale, wide-area applications. For example, UsenetDHT is a new design for Usenet News developed in this thesis that uses a DHT to cooperatively deliver Usenet articles: the DHT allows a set of N hosts to share storage of Usenet articles, reducing their combined storage requirements by a factor of O(N). Usenet generates a continuous stream of writes that exceeds 1 Tbyte/day in volume, comprising over ten million writes. Supporting this and the associated read workload requires a DHT engineered for durability and efficiency. Recovering from network and machine failures efficiently poses a challenge for DHT replication maintenance algorithms that provide durability. To avoid losing the last replica, replica maintenance must create additional replicas when failures are detected. However, creating replicas after every failure stresses network and storage resources unnecessarily. Tracking the location of every replica of every object would allow a replica maintenance algorithm to create replicas only when necessary, but when storing terabytes of data, such tracking is difficult to perform accurately and efficiently. This thesis describes a new algorithm, Passing Tone, that maintains durability efficiently, in a completely decentralized manner, despite transient and permanent failures. Passing Tone nodes make replication decisions with just basic DHT routing state, without maintaining state about the number or location of extant replicas and without responding to every transient failure with a new replica. Passing Tone is implemented in a revised version of DHash, optimized for both disk and network performance.(cont.) A sample 12 node deployment of Passing Tone and UsenetDHT supports a partial Usenet feed of 2.5 Mbyte/s (processing over 80 Tbyte of data per year), while providing 30 Mbyte/s of read throughput, limited currently by disk seeks. This deployment is the first public DHT to store terabytes of data. These results indicate that DHT-based designs can successfully simplify the construction of large-scale, wide-area systems.by Emil Sit.Ph.D