396 research outputs found

    Geometric data understanding : deriving case specific features

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    There exists a tradition using precise geometric modeling, where uncertainties in data can be considered noise. Another tradition relies on statistical nature of vast quantity of data, where geometric regularity is intrinsic to data and statistical models usually grasp this level only indirectly. This work focuses on point cloud data of natural resources and the silhouette recognition from video input as two real world examples of problems having geometric content which is intangible at the raw data presentation. This content could be discovered and modeled to some degree by such machine learning (ML) approaches like deep learning, but either a direct coverage of geometry in samples or addition of special geometry invariant layer is necessary. Geometric content is central when there is a need for direct observations of spatial variables, or one needs to gain a mapping to a geometrically consistent data representation, where e.g. outliers or noise can be easily discerned. In this thesis we consider transformation of original input data to a geometric feature space in two example problems. The first example is curvature of surfaces, which has met renewed interest since the introduction of ubiquitous point cloud data and the maturation of the discrete differential geometry. Curvature spectra can characterize a spatial sample rather well, and provide useful features for ML purposes. The second example involves projective methods used to video stereo-signal analysis in swimming analytics. The aim is to find meaningful local geometric representations for feature generation, which also facilitate additional analysis based on geometric understanding of the model. The features are associated directly to some geometric quantity, and this makes it easier to express the geometric constraints in a natural way, as shown in the thesis. Also, the visualization and further feature generation is much easier. Third, the approach provides sound baseline methods to more traditional ML approaches, e.g. neural network methods. Fourth, most of the ML methods can utilize the geometric features presented in this work as additional features.Geometriassa käytetään perinteisesti tarkkoja malleja, jolloin datassa esiintyvät epätarkkuudet edustavat melua. Toisessa perinteessä nojataan suuren datamäärän tilastolliseen luonteeseen, jolloin geometrinen säännönmukaisuus on datan sisäsyntyinen ominaisuus, joka hahmotetaan tilastollisilla malleilla ainoastaan epäsuorasti. Tämä työ keskittyy kahteen esimerkkiin: luonnonvaroja kuvaaviin pistepilviin ja videohahmontunnistukseen. Nämä ovat todellisia ongelmia, joissa geometrinen sisältö on tavoittamattomissa raakadatan tasolla. Tämä sisältö voitaisiin jossain määrin löytää ja mallintaa koneoppimisen keinoin, esim. syväoppimisen avulla, mutta joko geometria pitää kattaa suoraan näytteistämällä tai tarvitaan neuronien lisäkerros geometrisia invariansseja varten. Geometrinen sisältö on keskeinen, kun tarvitaan suoraa avaruudellisten suureiden havainnointia, tai kun tarvitaan kuvaus geometrisesti yhtenäiseen dataesitykseen, jossa poikkeavat näytteet tai melu voidaan helposti erottaa. Tässä työssä tarkastellaan datan muuntamista geometriseen piirreavaruuteen kahden esimerkkiohjelman suhteen. Ensimmäinen esimerkki on pintakaarevuus, joka on uudelleen virinneen kiinnostuksen kohde kaikkialle saatavissa olevan datan ja diskreetin geometrian kypsymisen takia. Kaarevuusspektrit voivat luonnehtia avaruudellista kohdetta melko hyvin ja tarjota koneoppimisessa hyödyllisiä piirteitä. Toinen esimerkki koskee projektiivisia menetelmiä käytettäessä stereovideosignaalia uinnin analytiikkaan. Tavoite on löytää merkityksellisiä paikallisen geometrian esityksiä, jotka samalla mahdollistavat muun geometrian ymmärrykseen perustuvan analyysin. Piirteet liittyvät suoraan johonkin geometriseen suureeseen, ja tämä helpottaa luonnollisella tavalla geometristen rajoitteiden käsittelyä, kuten väitöstyössä osoitetaan. Myös visualisointi ja lisäpiirteiden luonti muuttuu helpommaksi. Kolmanneksi, lähestymistapa suo selkeän vertailumenetelmän perinteisemmille koneoppimisen lähestymistavoille, esim. hermoverkkomenetelmille. Neljänneksi, useimmat koneoppimismenetelmät voivat hyödyntää tässä työssä esitettyjä geometrisia piirteitä lisäämällä ne muiden piirteiden joukkoon

    Structure-aware content creation : detection, retargeting and deformation

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    Nowadays, access to digital information has become ubiquitous, while three-dimensional visual representation is becoming indispensable to knowledge understanding and information retrieval. Three-dimensional digitization plays a natural role in bridging connections between the real and virtual world, which prompt the huge demand for massive three-dimensional digital content. But reducing the effort required for three-dimensional modeling has been a practical problem, and long standing challenge in compute graphics and related fields. In this thesis, we propose several techniques for lightening up the content creation process, which have the common theme of being structure-aware, ie maintaining global relations among the parts of shape. We are especially interested in formulating our algorithms such that they make use of symmetry structures, because of their concise yet highly abstract principles are universally applicable to most regular patterns. We introduce our work from three different aspects in this thesis. First, we characterized spaces of symmetry preserving deformations, and developed a method to explore this space in real-time, which significantly simplified the generation of symmetry preserving shape variants. Second, we empirically studied three-dimensional offset statistics, and developed a fully automatic retargeting application, which is based on verified sparsity. Finally, we made step forward in solving the approximate three-dimensional partial symmetry detection problem, using a novel co-occurrence analysis method, which could serve as the foundation to high-level applications.Jetzt hat die Zugang zu digitalen Informationen allgegenwärtig geworden. Dreidimensionale visuelle Darstellung wird immer zum Einsichtsverständnis und Informationswiedergewinnung unverzichtbar. Dreidimensionale Digitalisierung verbindet die reale und virtuelle Welt auf natürliche Weise, die prompt die große Nachfrage nach massiven dreidimensionale digitale Inhalte. Es ist immer noch ein praktisches Problem und langjährige Herausforderung in Computergrafik und verwandten Bereichen, die den Aufwand für die dreidimensionale Modellierung reduzieren. In dieser Dissertation schlagen wir verschiedene Techniken zur Aufhellung der Erstellung von Inhalten auf, im Rahmen der gemeinsamen Thema der struktur-bewusst zu sein, d.h. globalen Beziehungen zwischen den Teilen der Gestalt beibehalten wird. Besonders interessiert sind wir bei der Formulierung unserer Algorithmen, so dass sie den Einsatz von Symmetrische Strukturen machen, wegen ihrer knappen, aber sehr abstrakten Prinzipien für die meisten regelmäßigen Mustern universell einsetzbar sind. Wir stellen unsere Arbei aus drei verschiedenen Aspekte in dieser Dissertation. Erstens befinden wir Räume der Verformungen, die Symmetrien zu erhalten, und entwickelten wir eine Methode, diesen Raum in Echtzeit zu erkunden, die deutlich die Erzeugung von Gestalten vereinfacht, die Symmetrien zu bewahren. Zweitens haben wir empirisch untersucht dreidimensionale Offset Statistiken und entwickelten eine vollautomatische Applikation für Retargeting, die auf den verifizierte Seltenheit basiert. Schließlich treten wir uns auf die ungefähre dreidimensionalen Teilsymmetrie Erkennungsproblem zu lösen, auf der Grundlage unserer neuen Kookkurrenz Analyseverfahren, die viele hochrangige Anwendungen dienen verwendet werden könnten

    Proceedings of the Airborne Imaging Spectrometer Data Analysis Workshop

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    The Airborne Imaging Spectrometer (AIS) Data Analysis Workshop was held at the Jet Propulsion Laboratory on April 8 to 10, 1985. It was attended by 92 people who heard reports on 30 investigations currently under way using AIS data that have been collected over the past two years. Written summaries of 27 of the presentations are in these Proceedings. Many of the results presented at the Workshop are preliminary because most investigators have been working with this fundamentally new type of data for only a relatively short time. Nevertheless, several conclusions can be drawn from the Workshop presentations concerning the value of imaging spectrometry to Earth remote sensing. First, work with AIS has shown that direct identification of minerals through high spectral resolution imaging is a reality for a wide range of materials and geological settings. Second, there are strong indications that high spectral resolution remote sensing will enhance the ability to map vegetation species. There are also good indications that imaging spectrometry will be useful for biochemical studies of vegetation. Finally, there are a number of new data analysis techniques under development which should lead to more efficient and complete information extraction from imaging spectrometer data. The results of the Workshop indicate that as experience is gained with this new class of data, and as new analysis methodologies are developed and applied, the value of imaging spectrometry should increase

    Remote Sensing of Plant Biodiversity

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    This Open Access volume aims to methodologically improve our understanding of biodiversity by linking disciplines that incorporate remote sensing, and uniting data and perspectives in the fields of biology, landscape ecology, and geography. The book provides a framework for how biodiversity can be detected and evaluated—focusing particularly on plants—using proximal and remotely sensed hyperspectral data and other tools such as LiDAR. The volume, whose chapters bring together a large cross-section of the biodiversity community engaged in these methods, attempts to establish a common language across disciplines for understanding and implementing remote sensing of biodiversity across scales. The first part of the book offers a potential basis for remote detection of biodiversity. An overview of the nature of biodiversity is described, along with ways for determining traits of plant biodiversity through spectral analyses across spatial scales and linking spectral data to the tree of life. The second part details what can be detected spectrally and remotely. Specific instrumentation and technologies are described, as well as the technical challenges of detection and data synthesis, collection and processing. The third part discusses spatial resolution and integration across scales and ends with a vision for developing a global biodiversity monitoring system. Topics include spectral and functional variation across habitats and biomes, biodiversity variables for global scale assessment, and the prospects and pitfalls in remote sensing of biodiversity at the global scale

    Remote Sensing of Plant Biodiversity

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    At last, here it is. For some time now, the world has needed a text providing both a new theoretical foundation and practical guidance on how to approach the challenge of biodiversity decline in the Anthropocene. This is a global challenge demanding global approaches to understand its scope and implications. Until recently, we have simply lacked the tools to do so. We are now entering an era in which we can realistically begin to understand and monitor the multidimensional phenomenon of biodiversity at a planetary scale. This era builds upon three centuries of scientific research on biodiversity at site to landscape levels, augmented over the past two decades by airborne research platforms carrying spectrometers, lidars, and radars for larger-scale observations. Emerging international networks of fine-grain in-situ biodiversity observations complemented by space-based sensors offering coarser-grain imagery—but global coverage—of ecosystem composition, function, and structure together provide the information necessary to monitor and track change in biodiversity globally. This book is a road map on how to observe and interpret terrestrial biodiversity across scales through plants—primary producers and the foundation of the trophic pyramid. It honors the fact that biodiversity exists across different dimensions, including both phylogenetic and functional. Then, it relates these aspects of biodiversity to another dimension, the spectral diversity captured by remote sensing instruments operating at scales from leaf to canopy to biome. The biodiversity community has needed a Rosetta Stone to translate between the language of satellite remote sensing and its resulting spectral diversity and the languages of those exploring the phylogenetic diversity and functional trait diversity of life on Earth. By assembling the vital translation, this volume has globalized our ability to track biodiversity state and change. Thus, a global problem meets a key component of the global solution. The editors have cleverly built the book in three parts. Part 1 addresses the theory behind the remote sensing of terrestrial plant biodiversity: why spectral diversity relates to plant functional traits and phylogenetic diversity. Starting with first principles, it connects plant biochemistry, physiology, and macroecology to remotely sensed spectra and explores the processes behind the patterns we observe. Examples from the field demonstrate the rising synthesis of multiple disciplines to create a new cross-spatial and spectral science of biodiversity. Part 2 discusses how to implement this evolving science. It focuses on the plethora of novel in-situ, airborne, and spaceborne Earth observation tools currently and soon to be available while also incorporating the ways of actually making biodiversity measurements with these tools. It includes instructions for organizing and conducting a field campaign. Throughout, there is a focus on the burgeoning field of imaging spectroscopy, which is revolutionizing our ability to characterize life remotely. Part 3 takes on an overarching issue for any effort to globalize biodiversity observations, the issue of scale. It addresses scale from two perspectives. The first is that of combining observations across varying spatial, temporal, and spectral resolutions for better understanding—that is, what scales and how. This is an area of ongoing research driven by a confluence of innovations in observation systems and rising computational capacity. The second is the organizational side of the scaling challenge. It explores existing frameworks for integrating multi-scale observations within global networks. The focus here is on what practical steps can be taken to organize multi-scale data and what is already happening in this regard. These frameworks include essential biodiversity variables and the Group on Earth Observations Biodiversity Observation Network (GEO BON). This book constitutes an end-to-end guide uniting the latest in research and techniques to cover the theory and practice of the remote sensing of plant biodiversity. In putting it together, the editors and their coauthors, all preeminent in their fields, have done a great service for those seeking to understand and conserve life on Earth—just when we need it most. For if the world is ever to construct a coordinated response to the planetwide crisis of biodiversity loss, it must first assemble adequate—and global—measures of what we are losing

    Interpreting forest biome productivity and cover utilizing nested scales of image resolution and biogeographical analysis

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    The objective was to relate spectral imagery of varying resolution with ground-based data on forest productivity and cover, and to create models to predict regional estimates of forest productivity and cover with a quantifiable degree of accuracy. A three stage approach was outlined. In the first stage, a model was developed relating forest cover or productivity to TM surface reflectance values (TM/FOREST models). The TM/FOREST models were more accurate when biogeographic information regarding the landscape was either used to stratigy the landscape into more homogeneous units or incorporated directly into the TM/FOREST model. In the second stage, AVHRR/FOREST models that predicted forest cover and productivity on the basis of AVHRR band values were developed. The AVHRR/FOREST models had statistical properties similar to or better than those of the TM/FOREST models. In the third stage, the regional predictions were compared with the independent U.S. Forest Service (USFS) data. To do this regional forest cover and forest productivity maps were created using AVHRR scenes and the AVHRR/FOREST models. From the maps the county values of forest productivity and cover were calculated. It is apparent that the landscape has a strong influence on the success of the approach. An approach of using nested scales of imagery in conjunction with ground-based data can be successful in generating regional estimates of variables that are functionally related to some variable a sensor can detect

    Derivation of forest inventory parameters from high-resolution satellite imagery for the Thunkel area, Northern Mongolia. A comparative study on various satellite sensors and data analysis techniques.

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    With the demise of the Soviet Union and the transition to a market economy starting in the 1990s, Mongolia has been experiencing dramatic changes resulting in social and economic disparities and an increasing strain on its natural resources. The situation is exacerbated by a changing climate, the erosion of forestry related administrative structures, and a lack of law enforcement activities. Mongolia’s forests have been afflicted with a dramatic increase in degradation due to human and natural impacts such as overexploitation and wildfire occurrences. In addition, forest management practices are far from being sustainable. In order to provide useful information on how to viably and effectively utilise the forest resources in the future, the gathering and analysis of forest related data is pivotal. Although a National Forest Inventory was conducted in 2016, very little reliable and scientifically substantiated information exists related to a regional or even local level. This lack of detailed information warranted a study performed in the Thunkel taiga area in 2017 in cooperation with the GIZ. In this context, we hypothesise that (i) tree species and composition can be identified utilising the aerial imagery, (ii) tree height can be extracted from the resulting canopy height model with accuracies commensurate with field survey measurements, and (iii) high-resolution satellite imagery is suitable for the extraction of tree species, the number of trees, and the upscaling of timber volume and basal area based on the spectral properties. The outcomes of this study illustrate quite clearly the potential of employing UAV imagery for tree height extraction (R2 of 0.9) as well as for species and crown diameter determination. However, in a few instances, the visual interpretation of the aerial photographs were determined to be superior to the computer-aided automatic extraction of forest attributes. In addition, imagery from various satellite sensors (e.g. Sentinel-2, RapidEye, WorldView-2) proved to be excellently suited for the delineation of burned areas and the assessment of tree vigour. Furthermore, recently developed sophisticated classifying approaches such as Support Vector Machines and Random Forest appear to be tailored for tree species discrimination (Overall Accuracy of 89%). Object-based classification approaches convey the impression to be highly suitable for very high-resolution imagery, however, at medium scale, pixel-based classifiers outperformed the former. It is also suggested that high radiometric resolution bears the potential to easily compensate for the lack of spatial detectability in the imagery. Quite surprising was the occurrence of dark taiga species in the riparian areas being beyond their natural habitat range. The presented results matrix and the interpretation key have been devised as a decision tool and/or a vademecum for practitioners. In consideration of future projects and to facilitate the improvement of the forest inventory database, the establishment of permanent sampling plots in the Mongolian taigas is strongly advised.2021-06-0

    The impact of reared bumblebees and domesticated honeybees towards sympatric wild bees

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    Over the last few decades insect pollinators, including honeybees, bumblebees and wild bees, are declining severely due to a multitude of stressors. Important causes including anthropogenic impoverishment of the environment, agrochemicals, spread of diseases and interactions between them. Counteracting the pollinator crisis has resulted in management of pollination services, making the use of domesticated honeybee hives and reared bumblebee nests a common practice. However, managed pollinators can also act as a stressor to native bee populations in decline, for example through competition for food, spillover of (alien) pathogens or spread of non-native gut microorganisms. Some of these effects have been studied on allopatric bees after introduction of managed bees, yet, also within their native range managed bees can interfere with wild congeners. Therefore, in this dissertation we investigate different interactions of managed bees on sympatric native bee fauna. Firstly, a focus is set on the gut microbiota of reared bumblebees, their composition, stability and possible spillover. In a second part the impact of domesticated honeybees on sympatric wild bees is studied, with a focus on competition and the spread of uncommon and established pathogens. Generally, this thesis emphasizes the importance of studying sympatric interactions between managed and coevolved wild insect pollinators, especially when interfering in their natural environment

    Studies on the prevalence of viral pathogens in bat species inhabiting Wavul Galge cave, Sri Lanka

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    Bats of the order Chiroptera are globally distributed mammals and known to be the reservoir of numerous human pathogenic viruses. The increasing emergence of infectious disease outbreaks in the past century has also enhanced the research on bats and their associated viruses. The underlying project of this thesis also aims to assess the prevalence of viruses in Sri Lanka and their possible impact on public health issues. The focus of this thesis was the virological study of bats inhabiting Wavul Galge cave (Koslanda, Sri Lanka). The bats of the species Miniopterus fuliginosus, Rousettus leschenaultii,Rhinolophus rouxii, Hipposideros speoris and Hipposideros lankadiva live in one of the largest sympatric colonies that are known in Sri Lanka. Three major aims were pursued in this work. First, three bat sampling sessions were conducted in Wavul Galge to collect different sample types from all bat species. In this context, the bat sampling was optimized for future studies to do structured and reasonable samplings by considering virological, microbial, zoological, ecological and further aspects. Second, a variety of molecular virus detection methods was applied to estimate the prevalence of different viruses in the collected bat samples. Coronaviruses and Paramyxoviruses were identified in the bat species M. fuliginosus and R. leschenaultii. Furthermore, a full genome sequence of an α-Coronavirus derived from M. fuliginosus was assembled from NGS data. Also, a virome analysis of M. fuliginosus bats was obtained from mNGS data revealing the presence of further viruses. With this, viral sequences related to Astroviridae, Coronaviridae, Iflaviridae, Paramyxoviridae, Picornaviridae and unclassified Riboviria were detected. Third, the obtained data were further used for in-depth sequence analysis, phylogenetic reconstruction and evaluation of the human pathogenic potential. Based on the available data, this human pathogenic potential was assessed to be rather low in all novel virus strains. Summarized, the presented results of this thesis represent the first evidence of different viruses in cave-dwelling bat species from Sri Lanka. Further bat studies in this cave and other locations will increase the knowledge of virus prevalence in different bat species from Sri Lanka

    Proceedings of the 7th International Conference on Functional-Structural Plant Models, Saariselkä, Finland, 9 - 14 June 2013

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