Dynamic Feature Scaling for K-Nearest Neighbor Algorithm

Nearest Neighbors Algorithm is a Lazy Learning Algorithm, in which the algorithm tries to approximate the predictions with the help of similar existing vectors in the training dataset. The predictions made by the K-Nearest Neighbors algorithm is based on averaging the target values of the spatial neighbors. The selection process for neighbors in the Hermitian space is done with the help of distance metrics such as Euclidean distance, Minkowski distance, Mahalanobis distance etc. A majority of the metrics such as Euclidean distance are scale variant, meaning that the results could vary for different range of values used for the features. Standard techniques used for the normalization of scaling factors are feature scaling method such as Z-score normalization technique, Min-Max scaling etc. Scaling methods uniformly assign equal weights to all the features, which might result in a non-ideal situation. This paper proposes a novel method to assign weights to individual feature with the help of out of bag errors obtained from constructing multiple decision tree models.Comment: Presented in International Conference on Mathematical Computer Engineering 201

KNN Ensembles for Tweedie Regression: The Power of Multiscale Neighborhoods

Very few K-nearest-neighbor (KNN) ensembles exist, despite the efficacy of this approach in regression, classification, and outlier detection. Those that do exist focus on bagging features, rather than varying k or bagging observations; it is unknown whether varying k or bagging observations can improve prediction. Given recent studies from topological data analysis, varying k may function like multiscale topological methods, providing stability and better prediction, as well as increased ensemble diversity. This paper explores 7 KNN ensemble algorithms combining bagged features, bagged observations, and varied k to understand how each of these contribute to model fit. Specifically, these algorithms are tested on Tweedie regression problems through simulations and 6 real datasets; results are compared to state-of-the-art machine learning models including extreme learning machines, random forest, boosted regression, and Morse-Smale regression. Results on simulations suggest gains from varying k above and beyond bagging features or samples, as well as the robustness of KNN ensembles to the curse of dimensionality. KNN regression ensembles perform favorably against state-of-the-art algorithms and dramatically improve performance over KNN regression. Further, real dataset results suggest varying k is a good strategy in general (particularly for difficult Tweedie regression problems) and that KNN regression ensembles often outperform state-of-the-art methods. These results for k-varying ensembles echo recent theoretical results in topological data analysis, where multidimensional filter functions and multiscale coverings provide stability and performance gains over single-dimensional filters and single-scale covering. This opens up the possibility of leveraging multiscale neighborhoods and multiple measures of local geometry in ensemble methods.Comment: 17 pages, 11 figure

Relief-Based Feature Selection: Introduction and Review

Feature selection plays a critical role in biomedical data mining, driven by increasing feature dimensionality in target problems and growing interest in advanced but computationally expensive methodologies able to model complex associations. Specifically, there is a need for feature selection methods that are computationally efficient, yet sensitive to complex patterns of association, e.g. interactions, so that informative features are not mistakenly eliminated prior to downstream modeling. This paper focuses on Relief-based algorithms (RBAs), a unique family of filter-style feature selection algorithms that have gained appeal by striking an effective balance between these objectives while flexibly adapting to various data characteristics, e.g. classification vs. regression. First, this work broadly examines types of feature selection and defines RBAs within that context. Next, we introduce the original Relief algorithm and associated concepts, emphasizing the intuition behind how it works, how feature weights generated by the algorithm can be interpreted, and why it is sensitive to feature interactions without evaluating combinations of features. Lastly, we include an expansive review of RBA methodological research beyond Relief and its popular descendant, ReliefF. In particular, we characterize branches of RBA research, and provide comparative summaries of RBA algorithms including contributions, strategies, functionality, time complexity, adaptation to key data characteristics, and software availability.Comment: Submitted revisions for publication based on reviews by the Journal of Biomedical Informatic

Photometric Redshift Estimation for Quasars by Integration of KNN and SVM

The massive photometric data collected from multiple large-scale sky surveys offer significant opportunities for measuring distances of celestial objects by photometric redshifts. However, catastrophic failure is still an unsolved problem for a long time and exists in the current photometric redshift estimation approaches (such as $k$-nearest-neighbor). In this paper, we propose a novel two-stage approach by integration of $k$-nearest-neighbor (KNN) and support vector machine (SVM) methods together. In the first stage, we apply KNN algorithm on photometric data and estimate their corresponding z$_{\rm phot}$. By analysis, we find two dense regions with catastrophic failure, one in the range of z$_{\rm phot}\in[0.3,1.2]$, the other in the range of z$_{\rm phot}\in [1.2,2.1]$. In the second stage, we map the photometric input pattern of points falling into the two ranges from original attribute space into a high dimensional feature space by Gaussian kernel function in SVM. In the high dimensional feature space, many outlier points resulting from catastrophic failure by simple Euclidean distance computation in KNN can be identified by a classification hyperplane of SVM and further be corrected. Experimental results based on the SDSS (the Sloan Digital Sky Survey) quasar data show that the two-stage fusion approach can significantly mitigate catastrophic failure and improve the estimation accuracy of photometric redshifts of quasars. The percents in different |$\Delta$z| ranges and rms (root mean square) error by the integrated method are $83.47\%$, $89.83\%$, $90.90\%$ and 0.192, respectively, compared to the results by KNN ($71.96\%$, $83.78\%$, $89.73\%$ and 0.204).Comment: 14 pages, 7 figures, 1 table, accepted by Research in Astronomy and Astrophysic

Geometrical Complexity of Classification Problems

Despite encouraging recent progresses in ensemble approaches, classification methods seem to have reached a plateau in development. Further advances depend on a better understanding of geometrical and topological characteristics of point sets in high-dimensional spaces, the preservation of such characteristics under feature transformations and sampling processes, and their interaction with geometrical models used in classifiers. We discuss an attempt to measure such properties from data sets and relate them to classifier accuracies.Comment: Proceedings of the 7th Course on Ensemble Methods for Learning Machines at the International School on Neural Nets ``E.R. Caianiello'

Compact Hash Codes for Efficient Visual Descriptors Retrieval in Large Scale Databases

In this paper we present an efficient method for visual descriptors retrieval based on compact hash codes computed using a multiple k-means assignment. The method has been applied to the problem of approximate nearest neighbor (ANN) search of local and global visual content descriptors, and it has been tested on different datasets: three large scale public datasets of up to one billion descriptors (BIGANN) and, supported by recent progress in convolutional neural networks (CNNs), also on the CIFAR-10 and MNIST datasets. Experimental results show that, despite its simplicity, the proposed method obtains a very high performance that makes it superior to more complex state-of-the-art methods

Fast kNN mode seeking clustering applied to active learning

A significantly faster algorithm is presented for the original kNN mode seeking procedure. It has the advantages over the well-known mean shift algorithm that it is feasible in high-dimensional vector spaces and results in uniquely, well defined modes. Moreover, without any additional computational effort it may yield a multi-scale hierarchy of clusterings. The time complexity is just O(n^1.5). resulting computing times range from seconds for 10^4 objects to minutes for 10^5 objects and to less than an hour for 10^6 objects. The space complexity is just O(n). The procedure is well suited for finding large sets of small clusters and is thereby a candidate to analyze thousands of clusters in millions of objects. The kNN mode seeking procedure can be used for active learning by assigning the clusters to the class of the modal objects of the clusters. Its feasibility is shown by some examples with up to 1.5 million handwritten digits. The obtained classification results based on the clusterings are compared with those obtained by the nearest neighbor rule and the support vector classifier based on the same labeled objects for training. It can be concluded that using the clustering structure for classification can be significantly better than using the trained classifiers. A drawback of using the clustering for classification, however, is that no classifier is obtained that may be used for out-of-sample objects.Comment: 23 pages, 12 figure

Kernelized Hashcode Representations for Relation Extraction

Kernel methods have produced state-of-the-art results for a number of NLP tasks such as relation extraction, but suffer from poor scalability due to the high cost of computing kernel similarities between natural language structures. A recently proposed technique, kernelized locality-sensitive hashing (KLSH), can significantly reduce the computational cost, but is only applicable to classifiers operating on kNN graphs. Here we propose to use random subspaces of KLSH codes for efficiently constructing an explicit representation of NLP structures suitable for general classification methods. Further, we propose an approach for optimizing the KLSH model for classification problems by maximizing an approximation of mutual information between the KLSH codes (feature vectors) and the class labels. We evaluate the proposed approach on biomedical relation extraction datasets, and observe significant and robust improvements in accuracy w.r.t. state-of-the-art classifiers, along with drastic (orders-of-magnitude) speedup compared to conventional kernel methods.Comment: To appear in the proceedings of conference, AAAI-1

Vector Quantization by Minimizing Kullback-Leibler Divergence

This paper proposes a new method for vector quantization by minimizing the Kullback-Leibler Divergence between the class label distributions over the quantization inputs, which are original vectors, and the output, which is the quantization subsets of the vector set. In this way, the vector quantization output can keep as much information of the class label as possible. An objective function is constructed and we also developed an iterative algorithm to minimize it. The new method is evaluated on bag-of-features based image classification problem

Multipartite Pooling for Deep Convolutional Neural Networks

We propose a novel pooling strategy that learns how to adaptively rank deep convolutional features for selecting more informative representations. To this end, we exploit discriminative analysis to project the features onto a space spanned by the number of classes in the dataset under study. This maps the notion of labels in the feature space into instances in the projected space. We employ these projected distances as a measure to rank the existing features with respect to their specific discriminant power for each individual class. We then apply multipartite ranking to score the separability of the instances and aggregate one-versus-all scores to compute an overall distinction score for each feature. For the pooling, we pick features with the highest scores in a pooling window instead of maximum, average or stochastic random assignments. Our experiments on various benchmarks confirm that the proposed strategy of multipartite pooling is highly beneficial to consistently improve the performance of deep convolutional networks via better generalization of the trained models for the test-time data