4 research outputs found

    Near-Infrared Neuroimaging with NinPy

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    There has been substantial recent growth in the use of non-invasive optical brain imaging in studies of human brain function in health and disease. Near-infrared neuroimaging (NIN) is one of the most promising of these techniques and, although NIN hardware continues to evolve at a rapid pace, software tools supporting optical data acquisition, image processing, statistical modeling, and visualization remain less refined. Python, a modular and computationally efficient development language, can support functional neuroimaging studies of diverse design and implementation. In particular, Python's easily readable syntax and modular architecture allow swift prototyping followed by efficient transition to stable production systems. As an introduction to our ongoing efforts to develop Python software tools for structural and functional neuroimaging, we discuss: (i) the role of non-invasive diffuse optical imaging in measuring brain function, (ii) the key computational requirements to support NIN experiments, (iii) our collection of software tools to support NIN, called NinPy, and (iv) future extensions of these tools that will allow integration of optical with other structural and functional neuroimaging data sources. Source code for the software discussed here will be made available at www.nmr.mgh.harvard.edu/Neural_SystemsGroup/software.html

    FC-NIRS: A Functional Connectivity Analysis Tool for Near-Infrared Spectroscopy Data

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    An Information-Theoretic Approach to Quantitative Analysis of the Correspondence Between Skin Blood Flow and Functional Near-Infrared Spectroscopy Measurement in Prefrontal Cortex Activity

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    Effect of Skin blood flow (SBF) on functional near-infrared spectroscopy (fNIRS) measurement of cortical activity proves to be an illusive subject matter with divided stances in the neuroscientific literature on its extent. Whereas, some reports on its non-significant influence on fNIRS time series of cortical activity, others consider its impact misleading, even detrimental, in analysis of the brain activity as measured by fNIRS. This situation is further escalated by the fact that almost all analytical studies are based on comparison with functional Magnetic Resonance Imaging (fMRI). In this article, we pinpoint the lack of perspective in previous studies on preservation of information content of resulting fNIRS time series once the SBF is attenuated. In doing so, we propose information-theoretic criteria to quantify the necessary and sufficient conditions for SBF attenuation such that the information content of frontal brain activity in resulting fNIRS times series is preserved. We verify these criteria through evaluation of their utility in comparative analysis of principal component (PCA) and independent component (ICA) SBF attenuation algorithms. Our contributions are 2-fold. First, we show that mere reduction of SBF influence on fNIRS time series of frontal activity is insufficient to warrant preservation of cortical activity information. Second, we empirically justify a higher fidelity of PCA-based algorithm in preservation of the fontal activity's information content in comparison with ICA-based approach. Our results suggest that combination of the first two principal components of PCA-based algorithm results in most efficient SBF attenuation while preserving maximum frontal activity's information. These results contribute to the field by presenting a systematic approach to quantification of the SBF as an interfering process during fNIRS measurement, thereby drawing an informed conclusion on this debate. Furthermore, they provide evidence for a reliable choice among existing SBF attenuation algorithms and their inconclusive number of components, thereby ensuring minimum loss of cortical information during SBF attenuation process
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