Adaptive Resolution for Topology Modifications in Physically-based Animation

This paper shows the interest of basing a mechanical mesh upon an efficient topological model in order to give any simulation the ability to refine this mesh locally and apply topological modifications such as cutting, tear and matter destruction.Refinement and modifications can indeed be combined in order to get a more precise result.The powerful combinatorial map model provides the mathematical background which ensures that the quasi-manifold property is guaranteed for the mesh after any topological modification.The obtained results offer the versatility and time efficiency that are expected in applications such as surgical simulation

Doctor of Philosophy

dissertationThe increase in computational power of supercomputers is enabling complex scientific phenomena to be simulated at ever-increasing resolution and fidelity. With these simulations routinely producing large volumes of data, performing efficient I/O at this scale has become a very difficult task. Large-scale parallel writes are challenging due to the complex interdependencies between I/O middleware and hardware. Analytic-appropriate reads are traditionally hindered by bottlenecks in I/O access. Moreover, the two components of I/O, data generation from simulations (writes) and data exploration for analysis and visualization (reads), have substantially different data access requirements. Parallel writes, performed on supercomputers, often deploy aggregation strategies to permit large-sized contiguous access. Analysis and visualization tasks, usually performed on computationally modest resources, require fast access to localized subsets or multiresolution representations of the data. This dissertation tackles the problem of parallel I/O while bridging the gap between large-scale writes and analytics-appropriate reads. The focus of this work is to develop an end-to-end adaptive-resolution data movement framework that provides efficient I/O, while supporting the full spectrum of modern HPC hardware. This is achieved by developing technology for highly scalable and tunable parallel I/O, applicable to both traditional parallel data formats and multiresolution data formats, which are directly appropriate for analysis and visualization. To demonstrate the efficacy of the approach, a novel library (PIDX) is developed that is highly tunable and capable of adaptive-resolution parallel I/O to a multiresolution data format. Adaptive resolution storage and I/O, which allows subsets of a simulation to be accessed at varying spatial resolutions, can yield significant improvements to both the storage performance and I/O time. The library provides a set of parameters that controls the storage format and the nature of data aggregation across he network; further, a machine learning-based model is constructed that tunes these parameters for the maximum throughput. This work is empirically demonstrated by showing parallel I/O scaling up to 768K cores within a framework flexible enough to handle adaptive resolution I/O

A GPU-Accelerated Shallow-Water Scheme for Surface Runoff Simulations

The capability of a GPU-parallelized numerical scheme to perform accurate and fast simulations of surface runo in watersheds, exploiting high-resolution digital elevation models (DEMs), was investigated. The numerical computations were carried out by using an explicit finite volume numerical scheme and adopting a recent type of grid called Block-Uniform Quadtree (BUQ), capable of exploiting the computational power of GPUs with negligible overhead. Moreover, stability and zero mass error were ensured, even in the presence of very shallow water depth, by introducing a proper reconstruction of conserved variables at cell interfaces, a specific formulation of the slope source term and an explicit discretization of the friction source term. The 2D shallow water model was tested against two dierent literature tests and a real event that recently occurred in Italy for which field data is available. The influence of the spatial resolution adopted in dierent portions of the domain was also investigated for the last test. The achieved low ratio of simulation to physical times, in some cases less than 1:20, opens new perspectives for flood management strategies. Based on the result of such models, emergency plans can be designed in order to achieve a significant reduction in the economic losses generated by flood events

On Curved Simplicial Elements and Best Quadratic Spline Approximation for Hierarchical Data Representation

We present a method for hierarchical data approximation using curved quadratic simplicial elements for domain decomposition. Scientific data defined over two- or three-dimensional domains typically contain boundaries and discontinuities that are to be preserved and approximated well for data analysis and visualization. Curved simplicial elements make possible a better representation of curved geometry, domain boundaries, and discontinuities than simplicial elements with non-curved edges and faces. We use quadratic basis functions and compute best quadratic simplicial spline approximations that are $C^0$-continuous everywhere except where field discontinuities occur whose locations we assume to be given. We adaptively refine a simplicial approximation by identifying and bisecting simplicial elements with largest errors. It is possible to store multiple approximation levels of increasing quality. Our method can be used for hierarchical data processing and visualization

Operator-adapted wavelets for finite-element differential forms

We introduce in this paper an operator-adapted multiresolution analysis for finite-element differential forms. From a given continuous, linear, bijective, and self-adjoint positive-definite operator L, a hierarchy of basis functions and associated wavelets for discrete differential forms is constructed in a fine-to-coarse fashion and in quasilinear time. The resulting wavelets are L-orthogonal across all scales, and can be used to derive a Galerkin discretization of the operator such that its stiffness matrix becomes block-diagonal, with uniformly well-conditioned and sparse blocks. Because our approach applies to arbitrary differential p-forms, we can derive both scalar-valued and vector-valued wavelets block-diagonalizing a prescribed operator. We also discuss the generality of the construction by pointing out that it applies to various types of computational grids, offers arbitrary smoothness orders of basis functions and wavelets, and can accommodate linear differential constraints such as divergence-freeness. Finally, we demonstrate the benefits of the corresponding operator-adapted multiresolution decomposition for coarse-graining and model reduction of linear and non-linear partial differential equations

Subdivision Directional Fields

We present a novel linear subdivision scheme for face-based tangent directional fields on triangle meshes. Our subdivision scheme is based on a novel coordinate-free representation of directional fields as halfedge-based scalar quantities, bridging the finite-element representation with discrete exterior calculus. By commuting with differential operators, our subdivision is structure-preserving: it reproduces curl-free fields precisely, and reproduces divergence-free fields in the weak sense. Moreover, our subdivision scheme directly extends to directional fields with several vectors per face by working on the branched covering space. Finally, we demonstrate how our scheme can be applied to directional-field design, advection, and robust earth mover's distance computation, for efficient and robust computation