3D medical volume segmentation using hybrid multiresolution statistical approaches

This article is available through the Brunel Open Access Publishing Fund. Copyright © 2010 S AlZu’bi and A Amira.3D volume segmentation is the process of partitioning voxels into 3D regions (subvolumes) that represent meaningful physical entities which are more meaningful and easier to analyze and usable in future applications. Multiresolution Analysis (MRA) enables the preservation of an image according to certain levels of resolution or blurring. Because of multiresolution quality, wavelets have been deployed in image compression, denoising, and classification. This paper focuses on the implementation of efficient medical volume segmentation techniques. Multiresolution analysis including 3D wavelet and ridgelet has been used for feature extraction which can be modeled using Hidden Markov Models (HMMs) to segment the volume slices. A comparison study has been carried out to evaluate 2D and 3D techniques which reveals that 3D methodologies can accurately detect the Region Of Interest (ROI). Automatic segmentation has been achieved using HMMs where the ROI is detected accurately but suffers a long computation time for its calculations

Multiscale 3D Shape Analysis using Spherical Wavelets

©2005 Springer. The original publication is available at www.springerlink.com: http://dx.doi.org/10.1007/11566489_57DOI: 10.1007/11566489_57Shape priors attempt to represent biological variations within a population. When variations are global, Principal Component Analysis (PCA) can be used to learn major modes of variation, even from a limited training set. However, when significant local variations exist, PCA typically cannot represent such variations from a small training set. To address this issue, we present a novel algorithm that learns shape variations from data at multiple scales and locations using spherical wavelets and spectral graph partitioning. Our results show that when the training set is small, our algorithm significantly improves the approximation of shapes in a testing set over PCA, which tends to oversmooth data

Granite: A scientific database model and implementation

The principal goal of this research was to develop a formal comprehensive model for representing highly complex scientific data. An effective model should provide a conceptually uniform way to represent data and it should serve as a framework for the implementation of an efficient and easy-to-use software environment that implements the model. The dissertation work presented here describes such a model and its contributions to the field of scientific databases. In particular, the Granite model encompasses a wide variety of datatypes used across many disciplines of science and engineering today. It is unique in that it defines dataset geometry and topology as separate conceptual components of a scientific dataset. We provide a novel classification of geometries and topologies that has important practical implications for a scientific database implementation. The Granite model also offers integrated support for multiresolution and adaptive resolution data. Many of these ideas have been addressed by others, but no one has tried to bring them all together in a single comprehensive model. The datasource portion of the Granite model offers several further contributions. In addition to providing a convenient conceptual view of rectilinear data, it also supports multisource data. Data can be taken from various sources and combined into a unified view. The rod storage model is an abstraction for file storage that has proven an effective platform upon which to develop efficient access to storage. Our spatial prefetching technique is built upon the rod storage model, and demonstrates very significant improvement in access to scientific datasets, and also allows machines to access data that is far too large to fit in main memory. These improvements bring the extremely large datasets now being generated in many scientific fields into the realm of tractability for the ordinary researcher. We validated the feasibility and viability of the model by implementing a significant portion of it in the Granite system. Extensive performance evaluations of the implementation indicate that the features of the model can be provided in a user-friendly manner with an efficiency that is competitive with more ad hoc systems and more specialized application specific solutions

Image segmentation in the wavelet domain using N-cut framework

We introduce a wavelet domain image segmentation algorithm based on Normalized Cut (NCut) framework in this thesis. By employing the NCut algorithm we solve the perceptual grouping problem of image segmentation which aims at the extraction of the global impression of an image. We capitalize on the reduced set of data to be processed and statistical features derived from the wavelet-transformed images to solve graph partitioning more efficiently than before. Five orientation histograms are computed to evaluate similarity/dissimilarity measure of local structure. We use properties of the wavelet transform filtering to capture edge information in vertical, horizontal and diagonal orientations. This approach allows for direct processing of compressed data and results in faster implementation of NCut framework than that in the spatial domain and also decent quality of segmentation of natural scene images

A robust nonlinear scale space change detection approach for SAR images

In this paper, we propose a change detection approach based on nonlinear scale space analysis of change images for robust detection of various changes incurred by natural phenomena and/or human activities in Synthetic Aperture Radar (SAR) images using Maximally Stable Extremal Regions (MSERs). To achieve this, a variant of the log-ratio image of multitemporal images is calculated which is followed by Feature Preserving Despeckling (FPD) to generate nonlinear scale space images exhibiting different trade-offs in terms of speckle reduction and shape detail preservation. MSERs of each scale space image are found and then combined through a decision level fusion strategy, namely "selective scale fusion" (SSF), where contrast and boundary curvature of each MSER are considered. The performance of the proposed method is evaluated using real multitemporal high resolution TerraSAR-X images and synthetically generated multitemporal images composed of shapes with several orientations, sizes, and backscatter amplitude levels representing a variety of possible signatures of change. One of the main outcomes of this approach is that different objects having different sizes and levels of contrast with their surroundings appear as stable regions at different scale space images thus the fusion of results from scale space images yields a good overall performance

Source detection using a 3D sparse representation: application to the Fermi gamma-ray space telescope

The multiscale variance stabilization Transform (MSVST) has recently been proposed for Poisson data denoising. This procedure, which is nonparametric, is based on thresholding wavelet coefficients. We present in this paper an extension of the MSVST to 3D data (in fact 2D-1D data) when the third dimension is not a spatial dimension, but the wavelength, the energy, or the time. We show that the MSVST can be used for detecting and characterizing astrophysical sources of high-energy gamma rays, using realistic simulated observations with the Large Area Telescope (LAT). The LAT was launched in June 2008 on the Fermi Gamma-ray Space Telescope mission. The MSVST algorithm is very fast relative to traditional likelihood model fitting, and permits efficient detection across the time dimension and immediate estimation of spectral properties. Astrophysical sources of gamma rays, especially active galaxies, are typically quite variable, and our current work may lead to a reliable method to quickly characterize the flaring properties of newly-detected sources.Comment: Accepted. Full paper will figures available at http://jstarck.free.fr/aa08_msvst.pd