13,253 research outputs found

    Image Reconstruction from Undersampled Confocal Microscopy Data using Multiresolution Based Maximum Entropy Regularization

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    We consider the problem of reconstructing 2D images from randomly under-sampled confocal microscopy samples. The well known and widely celebrated total variation regularization, which is the L1 norm of derivatives, turns out to be unsuitable for this problem; it is unable to handle both noise and under-sampling together. This issue is linked with the notion of phase transition phenomenon observed in compressive sensing research, which is essentially the break-down of total variation methods, when sampling density gets lower than certain threshold. The severity of this breakdown is determined by the so-called mutual incoherence between the derivative operators and measurement operator. In our problem, the mutual incoherence is low, and hence the total variation regularization gives serious artifacts in the presence of noise even when the sampling density is not very low. There has been very few attempts in developing regularization methods that perform better than total variation regularization for this problem. We develop a multi-resolution based regularization method that is adaptive to image structure. In our approach, the desired reconstruction is formulated as a series of coarse-to-fine multi-resolution reconstructions; for reconstruction at each level, the regularization is constructed to be adaptive to the image structure, where the information for adaption is obtained from the reconstruction obtained at coarser resolution level. This adaptation is achieved by using maximum entropy principle, where the required adaptive regularization is determined as the maximizer of entropy subject to the information extracted from the coarse reconstruction as constraints. We demonstrate the superiority of the proposed regularization method over existing ones using several reconstruction examples

    Extended object reconstruction in adaptive-optics imaging: the multiresolution approach

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    We propose the application of multiresolution transforms, such as wavelets (WT) and curvelets (CT), to the reconstruction of images of extended objects that have been acquired with adaptive optics (AO) systems. Such multichannel approaches normally make use of probabilistic tools in order to distinguish significant structures from noise and reconstruction residuals. Furthermore, we aim to check the historical assumption that image-reconstruction algorithms using static PSFs are not suitable for AO imaging. We convolve an image of Saturn taken with the Hubble Space Telescope (HST) with AO PSFs from the 5-m Hale telescope at the Palomar Observatory and add both shot and readout noise. Subsequently, we apply different approaches to the blurred and noisy data in order to recover the original object. The approaches include multi-frame blind deconvolution (with the algorithm IDAC), myopic deconvolution with regularization (with MISTRAL) and wavelets- or curvelets-based static PSF deconvolution (AWMLE and ACMLE algorithms). We used the mean squared error (MSE) and the structural similarity index (SSIM) to compare the results. We discuss the strengths and weaknesses of the two metrics. We found that CT produces better results than WT, as measured in terms of MSE and SSIM. Multichannel deconvolution with a static PSF produces results which are generally better than the results obtained with the myopic/blind approaches (for the images we tested) thus showing that the ability of a method to suppress the noise and to track the underlying iterative process is just as critical as the capability of the myopic/blind approaches to update the PSF.Comment: In revision in Astronomy & Astrophysics. 19 pages, 13 figure

    Multiresolution analysis using wavelet, ridgelet, and curvelet transforms for medical image segmentation

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    Copyright @ 2011 Shadi AlZubi et al. This article has been made available through the Brunel Open Access Publishing Fund.The experimental study presented in this paper is aimed at the development of an automatic image segmentation system for classifying region of interest (ROI) in medical images which are obtained from different medical scanners such as PET, CT, or MRI. Multiresolution analysis (MRA) using wavelet, ridgelet, and curvelet transforms has been used in the proposed segmentation system. It is particularly a challenging task to classify cancers in human organs in scanners output using shape or gray-level information; organs shape changes throw different slices in medical stack and the gray-level intensity overlap in soft tissues. Curvelet transform is a new extension of wavelet and ridgelet transforms which aims to deal with interesting phenomena occurring along curves. Curvelet transforms has been tested on medical data sets, and results are compared with those obtained from the other transforms. Tests indicate that using curvelet significantly improves the classification of abnormal tissues in the scans and reduce the surrounding noise

    3D medical volume segmentation using hybrid multiresolution statistical approaches

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    This article is available through the Brunel Open Access Publishing Fund. Copyright © 2010 S AlZu’bi and A Amira.3D volume segmentation is the process of partitioning voxels into 3D regions (subvolumes) that represent meaningful physical entities which are more meaningful and easier to analyze and usable in future applications. Multiresolution Analysis (MRA) enables the preservation of an image according to certain levels of resolution or blurring. Because of multiresolution quality, wavelets have been deployed in image compression, denoising, and classification. This paper focuses on the implementation of efficient medical volume segmentation techniques. Multiresolution analysis including 3D wavelet and ridgelet has been used for feature extraction which can be modeled using Hidden Markov Models (HMMs) to segment the volume slices. A comparison study has been carried out to evaluate 2D and 3D techniques which reveals that 3D methodologies can accurately detect the Region Of Interest (ROI). Automatic segmentation has been achieved using HMMs where the ROI is detected accurately but suffers a long computation time for its calculations

    The Incremental Multiresolution Matrix Factorization Algorithm

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    Multiresolution analysis and matrix factorization are foundational tools in computer vision. In this work, we study the interface between these two distinct topics and obtain techniques to uncover hierarchical block structure in symmetric matrices -- an important aspect in the success of many vision problems. Our new algorithm, the incremental multiresolution matrix factorization, uncovers such structure one feature at a time, and hence scales well to large matrices. We describe how this multiscale analysis goes much farther than what a direct global factorization of the data can identify. We evaluate the efficacy of the resulting factorizations for relative leveraging within regression tasks using medical imaging data. We also use the factorization on representations learned by popular deep networks, providing evidence of their ability to infer semantic relationships even when they are not explicitly trained to do so. We show that this algorithm can be used as an exploratory tool to improve the network architecture, and within numerous other settings in vision.Comment: Computer Vision and Pattern Recognition (CVPR) 2017, 10 page

    Soft gamma-ray galactic ridge emission as unveiled by SPI aboard INTEGRAL

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    The origin of the soft gamma-ray (200 keV - 1 MeV) galactic ridge emission is one of the long-standing mysteries in the field of high-energy astrophysics. Population studies at lower energies have shown that emission from accreting compact objects gradually recedes in this domain, leaving place to another source of gamma-ray emission that is characterised by a hard power-law spectrum extending from 100 keV up to 100 MeV The nature of this hard component has remained so far elusive, partly due to the lack of sufficiently sensitive imaging telescopes that would be able to unveil the spatial distribution of the emission. The SPI telescope aboard INTEGRAL allows now for the first time the simultaneous imaging of diffuse and point-like emission in the soft gamma-ray regime. We present here all-sky images of the soft gamma-ray continuum emission that clearly reveal the morphology of the different emission components. We discuss the implications of our results on the nature of underlying emission processes and we put our results in perspective of GLAST studies of diffuse galactic continuum emission

    Wavelet based segmentation of hyperspectral colon tissue imagery

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    Segmentation is an early stage for the automated classification of tissue cells between normal and malignant types. We present an algorithm for unsupervised segmentation of images of hyperspectral human colon tissue cells into their constituent parts by exploiting the spatial relationship between these constituent parts. This is done by employing a modification of the conventional wavelet based texture analysis, on the projection of hyperspectral image data in the first principal component direction. Results show that our algorithm is comparable to other more computationally intensive methods which exploit the spectral characteristics of the hyperspectral imagery data
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