8,129 research outputs found
MRI Field-transfer Reconstruction with Limited Data: Regularization by Neural Style Transfer
Recent works have demonstrated success in MRI reconstruction using deep
learning-based models. However, most reported approaches require training on a
task-specific, large-scale dataset. Regularization by denoising (RED) is a
general pipeline which embeds a denoiser as a prior for image reconstruction.
The potential of RED has been demonstrated for multiple image-related tasks
such as denoising, deblurring and super-resolution. In this work, we propose a
regularization by neural style transfer (RNST) method to further leverage the
priors from the neural transfer and denoising engine. This enables RNST to
reconstruct a high-quality image from a noisy low-quality image with different
image styles and limited data. We validate RNST with clinical MRI scans from
1.5T and 3T and show that RNST can significantly boost image quality. Our
results highlight the capability of the RNST framework for MRI reconstruction
and the potential for reconstruction tasks with limited data.Comment: 30 pages, 8 figures, 2 tables, 1 algorithm char
Simultaneous use of Individual and Joint Regularization Terms in Compressive Sensing: Joint Reconstruction of Multi-Channel Multi-Contrast MRI Acquisitions
Purpose: A time-efficient strategy to acquire high-quality multi-contrast
images is to reconstruct undersampled data with joint regularization terms that
leverage common information across contrasts. However, these terms can cause
leakage of uncommon features among contrasts, compromising diagnostic utility.
The goal of this study is to develop a compressive sensing method for
multi-channel multi-contrast magnetic resonance imaging (MRI) that optimally
utilizes shared information while preventing feature leakage.
Theory: Joint regularization terms group sparsity and colour total variation
are used to exploit common features across images while individual sparsity and
total variation are also used to prevent leakage of distinct features across
contrasts. The multi-channel multi-contrast reconstruction problem is solved
via a fast algorithm based on Alternating Direction Method of Multipliers.
Methods: The proposed method is compared against using only individual and
only joint regularization terms in reconstruction. Comparisons were performed
on single-channel simulated and multi-channel in-vivo datasets in terms of
reconstruction quality and neuroradiologist reader scores.
Results: The proposed method demonstrates rapid convergence and improved
image quality for both simulated and in-vivo datasets. Furthermore, while
reconstructions that solely use joint regularization terms are prone to
leakage-of-features, the proposed method reliably avoids leakage via
simultaneous use of joint and individual terms.
Conclusion: The proposed compressive sensing method performs fast
reconstruction of multi-channel multi-contrast MRI data with improved image
quality. It offers reliability against feature leakage in joint
reconstructions, thereby holding great promise for clinical use.Comment: 13 pages, 13 figures. Submitted for possible publicatio
Spatio-temporal wavelet regularization for parallel MRI reconstruction: application to functional MRI
Parallel MRI is a fast imaging technique that enables the acquisition of
highly resolved images in space or/and in time. The performance of parallel
imaging strongly depends on the reconstruction algorithm, which can proceed
either in the original k-space (GRAPPA, SMASH) or in the image domain
(SENSE-like methods). To improve the performance of the widely used SENSE
algorithm, 2D- or slice-specific regularization in the wavelet domain has been
deeply investigated. In this paper, we extend this approach using 3D-wavelet
representations in order to handle all slices together and address
reconstruction artifacts which propagate across adjacent slices. The gain
induced by such extension (3D-Unconstrained Wavelet Regularized -SENSE:
3D-UWR-SENSE) is validated on anatomical image reconstruction where no temporal
acquisition is considered. Another important extension accounts for temporal
correlations that exist between successive scans in functional MRI (fMRI). In
addition to the case of 2D+t acquisition schemes addressed by some other
methods like kt-FOCUSS, our approach allows us to deal with 3D+t acquisition
schemes which are widely used in neuroimaging. The resulting 3D-UWR-SENSE and
4D-UWR-SENSE reconstruction schemes are fully unsupervised in the sense that
all regularization parameters are estimated in the maximum likelihood sense on
a reference scan. The gain induced by such extensions is illustrated on both
anatomical and functional image reconstruction, and also measured in terms of
statistical sensitivity for the 4D-UWR-SENSE approach during a fast
event-related fMRI protocol. Our 4D-UWR-SENSE algorithm outperforms the SENSE
reconstruction at the subject and group levels (15 subjects) for different
contrasts of interest (eg, motor or computation tasks) and using different
parallel acceleration factors (R=2 and R=4) on 2x2x3mm3 EPI images.Comment: arXiv admin note: substantial text overlap with arXiv:1103.353
Aggregated motion estimation for real-time MRI reconstruction
Real-time magnetic resonance imaging (MRI) methods generally shorten the
measuring time by acquiring less data than needed according to the sampling
theorem. In order to obtain a proper image from such undersampled data, the
reconstruction is commonly defined as the solution of an inverse problem, which
is regularized by a priori assumptions about the object. While practical
realizations have hitherto been surprisingly successful, strong assumptions
about the continuity of image features may affect the temporal fidelity of the
estimated images. Here we propose a novel approach for the reconstruction of
serial real-time MRI data which integrates the deformations between nearby
frames into the data consistency term. The method is not required to be affine
or rigid and does not need additional measurements. Moreover, it handles
multi-channel MRI data by simultaneously determining the image and its coil
sensitivity profiles in a nonlinear formulation which also adapts to
non-Cartesian (e.g., radial) sampling schemes. Experimental results of a motion
phantom with controlled speed and in vivo measurements of rapid tongue
movements demonstrate image improvements in preserving temporal fidelity and
removing residual artifacts.Comment: This is a preliminary technical report. A polished version is
published by Magnetic Resonance in Medicine. Magnetic Resonance in Medicine
201
Spherical deconvolution of multichannel diffusion MRI data with non-Gaussian noise models and spatial regularization
Spherical deconvolution (SD) methods are widely used to estimate the
intra-voxel white-matter fiber orientations from diffusion MRI data. However,
while some of these methods assume a zero-mean Gaussian distribution for the
underlying noise, its real distribution is known to be non-Gaussian and to
depend on the methodology used to combine multichannel signals. Indeed, the two
prevailing methods for multichannel signal combination lead to Rician and
noncentral Chi noise distributions. Here we develop a Robust and Unbiased
Model-BAsed Spherical Deconvolution (RUMBA-SD) technique, intended to deal with
realistic MRI noise, based on a Richardson-Lucy (RL) algorithm adapted to
Rician and noncentral Chi likelihood models. To quantify the benefits of using
proper noise models, RUMBA-SD was compared with dRL-SD, a well-established
method based on the RL algorithm for Gaussian noise. Another aim of the study
was to quantify the impact of including a total variation (TV) spatial
regularization term in the estimation framework. To do this, we developed TV
spatially-regularized versions of both RUMBA-SD and dRL-SD algorithms. The
evaluation was performed by comparing various quality metrics on 132
three-dimensional synthetic phantoms involving different inter-fiber angles and
volume fractions, which were contaminated with noise mimicking patterns
generated by data processing in multichannel scanners. The results demonstrate
that the inclusion of proper likelihood models leads to an increased ability to
resolve fiber crossings with smaller inter-fiber angles and to better detect
non-dominant fibers. The inclusion of TV regularization dramatically improved
the resolution power of both techniques. The above findings were also verified
in brain data
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