102 research outputs found
Introduction to Facial Micro Expressions Analysis Using Color and Depth Images: A Matlab Coding Approach (Second Edition, 2023)
The book attempts to introduce a gentle introduction to the field of Facial
Micro Expressions Recognition (FMER) using Color and Depth images, with the aid
of MATLAB programming environment. FMER is a subset of image processing and it
is a multidisciplinary topic to analysis. So, it requires familiarity with
other topics of Artifactual Intelligence (AI) such as machine learning, digital
image processing, psychology and more. So, it is a great opportunity to write a
book which covers all of these topics for beginner to professional readers in
the field of AI and even without having background of AI. Our goal is to
provide a standalone introduction in the field of MFER analysis in the form of
theorical descriptions for readers with no background in image processing with
reproducible Matlab practical examples. Also, we describe any basic definitions
for FMER analysis and MATLAB library which is used in the text, that helps
final reader to apply the experiments in the real-world applications. We
believe that this book is suitable for students, researchers, and professionals
alike, who need to develop practical skills, along with a basic understanding
of the field. We expect that, after reading this book, the reader feels
comfortable with different key stages such as color and depth image processing,
color and depth image representation, classification, machine learning, facial
micro-expressions recognition, feature extraction and dimensionality reduction.
The book attempts to introduce a gentle introduction to the field of Facial
Micro Expressions Recognition (FMER) using Color and Depth images, with the aid
of MATLAB programming environment.Comment: This is the second edition of the boo
Various Applications of Methods and Elements of Adaptive Optics
This volume is focused on a wide range of topics, including adaptive optic components and tools, wavefront sensing, different control algorithms, astronomy, and propagation through turbulent and turbid media
Deep Structured Layers for Instance-Level Optimization in 2D and 3D Vision
The approach we present in this thesis is that of integrating optimization problems
as layers in deep neural networks. Optimization-based modeling provides an additional set of tools enabling the design of powerful neural networks for a wide
battery of computer vision tasks. This thesis shows formulations and experiments
for vision tasks ranging from image reconstruction to 3D reconstruction.
We first propose an unrolled optimization method with implicit regularization
properties for reconstructing images from noisy camera readings. The method resembles an unrolled majorization minimization framework with convolutional neural networks acting as regularizers. We report state-of-the-art performance in image
reconstruction on both noisy and noise-free evaluation setups across many datasets.
We further focus on the task of monocular 3D reconstruction of articulated objects using video self-supervision. The proposed method uses a structured layer for
accurate object deformation that controls a 3D surface by displacing a small number
of learnable handles. While relying on a small set of training data per category for
self-supervision, the method obtains state-of-the-art reconstruction accuracy with
diverse shapes and viewpoints for multiple articulated objects.
We finally address the shortcomings of the previous method that revolve
around regressing the camera pose using multiple hypotheses. We propose a method
that recovers a 3D shape from a 2D image by relying solely on 3D-2D correspondences regressed from a convolutional neural network. These correspondences are
used in conjunction with an optimization problem to estimate per sample the camera pose and deformation. We quantitatively show the effectiveness of the proposed
method on self-supervised 3D reconstruction on multiple categories without the need for multiple hypotheses
Need for speed:Achieving fast image processing in acute stroke care
This thesis aims to investigate the use of high-performance computing (HPC) techniques in developing imaging biomarkers to support the clinical workflow of acute stroke patients. In the first part of this thesis, we evaluate different HPC technologies and how such technologies can be leveraged by different image analysis applications used in the context of acute stroke care. More specifically, we evaluated how computers with multiple computing devices can be used to accelerate medical imaging applications in Chapter 2. Chapter 3 proposes a novel data compression technique that efficiently processes CT perfusion (CTP) images in GPUs. Unfortunately, the size of CTP datasets makes data transfers to computing devices time-consuming and, therefore, unsuitable in acute situations. Chapter 4 further evaluates the algorithm's usefulness proposed in Chapter 3 with two different applications: a double threshold segmentation and a time-intensity profile similarity (TIPS) bilateral filter to reduce noise in CTP scans. Finally, Chapter 5 presents a cloud platform for deploying high-performance medical applications for acute stroke patients. In Part 2 of this thesis, Chapter 6 presents a convolutional neural network (CNN) for detecting and volumetric segmentation of subarachnoid hemorrhages (SAH) in non-contrast CT scans. Chapter 7 proposed another method based on CNNs to quantify the final infarct volumes in follow-up non-contrast CT scans from ischemic stroke patients
Automated Diagnosis of Cardiovascular Diseases from Cardiac Magnetic Resonance Imaging Using Deep Learning Models: A Review
In recent years, cardiovascular diseases (CVDs) have become one of the
leading causes of mortality globally. CVDs appear with minor symptoms and
progressively get worse. The majority of people experience symptoms such as
exhaustion, shortness of breath, ankle swelling, fluid retention, and other
symptoms when starting CVD. Coronary artery disease (CAD), arrhythmia,
cardiomyopathy, congenital heart defect (CHD), mitral regurgitation, and angina
are the most common CVDs. Clinical methods such as blood tests,
electrocardiography (ECG) signals, and medical imaging are the most effective
methods used for the detection of CVDs. Among the diagnostic methods, cardiac
magnetic resonance imaging (CMR) is increasingly used to diagnose, monitor the
disease, plan treatment and predict CVDs. Coupled with all the advantages of
CMR data, CVDs diagnosis is challenging for physicians due to many slices of
data, low contrast, etc. To address these issues, deep learning (DL) techniques
have been employed to the diagnosis of CVDs using CMR data, and much research
is currently being conducted in this field. This review provides an overview of
the studies performed in CVDs detection using CMR images and DL techniques. The
introduction section examined CVDs types, diagnostic methods, and the most
important medical imaging techniques. In the following, investigations to
detect CVDs using CMR images and the most significant DL methods are presented.
Another section discussed the challenges in diagnosing CVDs from CMR data.
Next, the discussion section discusses the results of this review, and future
work in CVDs diagnosis from CMR images and DL techniques are outlined. The most
important findings of this study are presented in the conclusion section
Deep learning-based improvement for the outcomes of glaucoma clinical trials
Glaucoma is the leading cause of irreversible blindness worldwide. It is a progressive optic neuropathy in which retinal ganglion cell (RGC) axon loss, probably as a consequence of damage at the optic disc, causes a loss of vision, predominantly affecting the mid-peripheral visual field (VF). Glaucoma results in a decrease in vision-related quality of life and, therefore, early detection and evaluation of disease progression rates is crucial in order to assess the risk of functional impairment and to establish sound treatment strategies. The aim of my research is to improve glaucoma diagnosis by enhancing state of the art analyses of glaucoma clinical trial outcomes using advanced analytical methods. This knowledge would also help better design and analyse clinical trials, providing evidence for re-evaluating existing medications, facilitating diagnosis and suggesting novel disease management.
To facilitate my objective methodology, this thesis provides the following contributions: (i) I developed deep learning-based super-resolution (SR) techniques for optical coherence tomography (OCT) image enhancement and demonstrated that using super-resolved images improves the statistical power of clinical trials, (ii) I developed a deep learning algorithm for segmentation of retinal OCT images, showing that the methodology consistently produces more accurate segmentations than state-of-the-art networks, (iii) I developed a deep learning framework for refining the relationship between structural and functional measurements and demonstrated that the mapping is significantly improved over previous techniques, iv) I developed a probabilistic method and demonstrated that glaucomatous disc haemorrhages are influenced by a possible systemic factor that makes both eyes bleed simultaneously. v) I recalculated VF slopes, using the retinal never fiber layer thickness (RNFLT) from the super-resolved OCT as a Bayesian prior and demonstrated that use of VF rates with the Bayesian prior as the outcome measure leads to a reduction in the sample size required to distinguish treatment arms in a clinical trial
Development of detection and tracking methods for characterizing Cardiac Progenitor Cell migration patterns in Gallus gallus
Cardiac cells originate from a population of progenitors which establish the early heart tube following a long-range migration event that initiates during gastrulation. After exiting the mid-anterior primitive streak, the trajectories of cardiac progenitor cells (CPCs) up to the fusion of the primitive heart tube have been previously characterised. Associating the function of signalling molecules with these migration patterns and the subsequent outcome on heart development is still poorly understood. The popular and versatile software TrackMate has previously been used to track fluorescently labelled cells in embryos across time-lapsed images, but the tool has not been evaluated in the context of CPC migration in chick embryos. Here, we identified shortcomings in TrackMate’s cell detection and single-cell-tracking methods in general, so instead developed a tracking method based on kernel density estimates of generalized groups of cells. After training and evaluating our approach using simulated migration datasets, we applied the method on true CPC time-lapses to determine a significantly more obtuse initial exit angle in CPCs treated with follistatin compared to controls. We further provided a proof-of-concept machine learning-based workflow for automatically comparing CPC migration time-lapses when current datasets are expanded
Recent Advances in Machine Learning Applied to Ultrasound Imaging
Machine learning (ML) methods are pervading an increasing number of fields of application because of their capacity to effectively solve a wide variety of challenging problems. The employment of ML techniques in ultrasound imaging applications started several years ago but the scientific interest in this issue has increased exponentially in the last few years. The present work reviews the most recent (2019 onwards) implementations of machine learning techniques for two of the most popular ultrasound imaging fields, medical diagnostics and non-destructive evaluation. The former, which covers the major part of the review, was analyzed by classifying studies according to the human organ investigated and the methodology (e.g., detection, segmentation, and/or classification) adopted, while for the latter, some solutions to the detection/classification of material defects or particular patterns are reported. Finally, the main merits of machine learning that emerged from the study analysis are summarized and discussed. © 2022 by the authors. Licensee MDPI, Basel, Switzerland
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