Cellular Automaton Belousov-Zhabotinsky Model for Binary Full Adder

© 2017 World Scientific Publishing Company. The continuous increment in the performance of classical computers has been driven to its limit. New ways are studied to avoid this oncoming bottleneck and many answers can be found. An example is the Belousov-Zhabotinsky (BZ) reaction which includes some fundamental and essential characteristics that attract chemists, biologists, and computer scientists. Interaction of excitation wave-fronts in BZ system, can be interpreted in terms of logical gates and applied in the design of unconventional hardware components. Logic gates and other more complicated components have been already proposed using different topologies and particular characteristics. In this study, the inherent parallelism and simplicity of Cellular Automata (CAs) modeling is combined with an Oregonator model of light-sensitive version of BZ reaction. The resulting parallel and computationally-inexpensive model has the ability to simulate a topology that can be considered as a one-bit full adder digital component towards the design of an Arithmetic Logic Unit (ALU)

Artificial Wet Neuronal Networks from Compartmentalised Excitable Chemical Media (NEUNEU)

This document is a guide to the results of the NEUNEU research program, which is concerned with the development of mass- producible chemical information processing components and their interconnection into functional architectures.This document is a guide to the results of the NEUNEU research program, which is concerned with the development of mass- producible chemical information processing components and their interconnection into functional architectures

Physarum machines for space missions

A Physarum machine is a programmable amorphous biological computer experimentally implemented in plasmodium Physarum polycephalum. We overview a range of tasks solvable by Physarum machines and speculate on how the Physarum machines could be used in future space missions

Unconventional programming: non-programmable systems

Die Forschung aus dem Bereich der unkonventionellen und natürlichen Informationsverarbeitungssysteme verspricht kontrollierbare Rechenprozesse in ungewöhnlichen Medien zu realisieren, zum Beispiel auf der molekularen Ebene oder in Bakterienkolonien. Vielversprechende Eigenschaften dieser Systeme sind das nichtlineare Verhalten und der hohe Verknüpfungsgrad der beteiligten Komponenten in Analogie zu Neuronen im Gehirn. Da aber Programmierung meist auf Prinzipien wie Modularisierung, Kapselung und Vorhersagbarkeit beruht sind diese Systeme oft schwer- bzw. unprogrammierbar. Im Gegensatz zu vielen Arbeiten über unkonventionelle Rechensysteme soll in dieser Arbeit aber nicht hauptsächlich nach neuen rechnenden Systemen und Anwendungen dieser gesucht werden. Stattdessen konzentriert sich diese Dissertation auf unkonventionelle Programmieransätze, die sowohl für unkonventionelle Computer als auch für herkommliche digitale Rechner neue Perspektiven eröffnen sollen. Hauptsächlich in Bezug auf ein Modell künstlicher chemischer Neuronen werden Ansätze für unkonventionelle Programmierverfahren, basierend auf Evolutionären Algorithmen, Informationstheorie und Selbstorganisation bis hin zur Selbstassemblierung untersucht. Ein spezielles Augenmerk liegt dabei auf dem Problem der Symbolkodierung: Oft gibt es mehrere oder sogar unendlich viele Möglichkeiten, Informationen in den Zuständen eines komplexen dynamischen Systems zu kodieren. In Neuronalen Netzen gibt es unter anderem die Spikefrequenz aber auch Populationskodes. In Abhängigkeit von den weiteren Eigenschaften des Systems, beispielsweise von der Informationsverarbeitungsaufgabe und dem gewünschten Eingabe-Ausgabeverhalten dürften sich verschiedene Kodierungen als unterschiedlich nützlich erweisen. Daher werden hier Methoden betrachtet um die verschiedene Symbolkodierungmethoden zu evaluieren, zu analysieren und um nach neuen, geeigneten Kodierungen zu suchen.Unconventional and natural computing research offers controlled information modification processes in uncommon media, for example on the molecular scale or in bacteria colonies. Promising aspects of such systems are often the non-linear behavior and the high connectivity of the involved information processing components in analogy to neurons in the nervous system. Unfortunately, such properties make the system behavior hard to understand, hard to predict and thus also hard to program with common engineering principles like modularization and composition, leading to the term of non-programmable systems. In contrast to many unconventional computing works that are often focused on finding novel computing substrates and potential applications, unconventional programming approaches for such systems are the theme of this thesis: How can new programming concepts open up new perspectives for unconventional but hopefully also for traditional, digital computing systems? Mostly based on a model of artificial wet chemical neurons, different unconventional programming approaches from evolutionary algorithms, information theory, self-organization and self-assembly are explored. A particular emphasis is given on the problem of symbol encodings: Often there are multiple or even an unlimited number of possibilities to encode information in the phase space of dynamical systems, e.g. spike frequencies or population coding in neural networks. But different encodings will probably be differently useful, dependent on the system properties, the information transformation task and the desired connectivity to other systems. Hence methods are investigated that can evaluate, analyse as well as identify suitable symbol encoding schemes

Towards experimental P-systems using multivesicular liposomes

P-systems are abstract computational models inspired by the phospholipid bilayer membranes generated by biological cells. Illustrated here is a mechanism by which recursive liposome structures (multivesicular liposomes) may be experimentally produced through electroformation of dipalmitoylphosphatidylcholine (DOPC) films for use in ‘real’ P-systems. We first present the electroformation protocol and microscopic characterisation of incident liposomes towards estimating the size of computing elements, level of internal compartment recursion, fault tolerance and stability. Following, we demonstrate multiple routes towards embedding symbols, namely modification of swelling solutions, passive diffusion and microinjection. Finally, we discuss how computing devices based on P-systems can be produced and their current limitations