Multi-resolution cell orientation congruence descriptors for epithelium segmentation in endometrial histology images

It has been recently shown that recurrent miscarriage can be caused by abnormally high ratio of number of uterine natural killer (UNK) cells to the number of stromal cells in human female uterus lining. Due to high workload, the counting of UNK and stromal cells needs to be automated using computer algorithms. However, stromal cells are very similar in appearance to epithelial cells which must be excluded in the counting process. To exclude the epithelial cells from the counting process it is necessary to identify epithelial regions. There are two types of epithelial layers that can be encountered in the endometrium: luminal epithelium and glandular epithelium. To the best of our knowledge, there is no existing method that addresses the segmentation of both types of epithelium simultaneously in endometrial histology images. In this paper, we propose a multi-resolution Cell Orientation Congruence (COCo) descriptor which exploits the fact that neighbouring epithelial cells exhibit similarity in terms of their orientations. Our experimental results show that the proposed descriptors yield accurate results in simultaneously segmenting both luminal and glandular epithelium

Locality sensitive modelling approach for object detection, tracking and segmentation in biomedical images

Biomedical imaging techniques play an important role in visualisation of e.g., biological structures, tissues, diseases and medical conditions in cellular level. The techniques bring us enormous image datasets for studying biological processes, clinical diagnosis and medical analysis. Thanks to recent advances in computer technology and hardware, automatic analysis of biomedical images becomes more feasible and popular. Although computer scientists have made a great effort in developing advanced imaging processing algorithms, many problems regarding object analysis still remain unsolved due to the diversity of biomedical imaging. In this thesis, we focus on developing object analysis solutions for two entirely different biomedical image types: uorescence microscopy sequences and endometrial histology images. In uorescence microscopy, our task is to track massive uorescent spots with similar appearances and complicated motion pattern in noisy environments over hundreds of frames. In endometrial histology, we are challenged by detecting different types of cells with similar appearance and in terms of colour and morphology. The proposed solutions utilise several novel locality sensitive models which can extract spatial or/and temporal relational features of the objects, i.e., local neighbouring objects exhibiting certain structures or patterns, for overcoming the difficulties of object analysis in uorescence microscopy and endometrial histology