A clustering particle swarm optimizer for dynamic optimization

This article is posted here with permission of the IEEE - Copyright @ 2009 IEEEIn the real world, many applications are nonstationary optimization problems. This requires that optimization algorithms need to not only find the global optimal solution but also track the trajectory of the changing global best solution in a dynamic environment. To achieve this, this paper proposes a clustering particle swarm optimizer (CPSO) for dynamic optimization problems. The algorithm employs hierarchical clustering method to track multiple peaks based on a nearest neighbor search strategy. A fast local search method is also proposed to find the near optimal solutions in a local promising region in the search space. Six test problems generated from a generalized dynamic benchmark generator (GDBG) are used to test the performance of the proposed algorithm. The numerical experimental results show the efficiency of the proposed algorithm for locating and tracking multiple optima in dynamic environments.This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) of the United Kingdom under Grant EP/E060722/1

A clustering particle swarm optimizer for locating and tracking multiple optima in dynamic environments

This article is posted here with permission from the IEEE - Copyright @ 2010 IEEEIn the real world, many optimization problems are dynamic. This requires an optimization algorithm to not only find the global optimal solution under a specific environment but also to track the trajectory of the changing optima over dynamic environments. To address this requirement, this paper investigates a clustering particle swarm optimizer (PSO) for dynamic optimization problems. This algorithm employs a hierarchical clustering method to locate and track multiple peaks. A fast local search method is also introduced to search optimal solutions in a promising subregion found by the clustering method. Experimental study is conducted based on the moving peaks benchmark to test the performance of the clustering PSO in comparison with several state-of-the-art algorithms from the literature. The experimental results show the efficiency of the clustering PSO for locating and tracking multiple optima in dynamic environments in comparison with other particle swarm optimization models based on the multiswarm method.This work was supported by the Engineering and Physical Sciences Research Council of U.K., under Grant EP/E060722/1

An artificial immune systems based predictive modelling approach for the multi-objective elicitation of Mamdani fuzzy rules: a special application to modelling alloys

In this paper, a systematic multi-objective Mamdani fuzzy modeling approach is proposed, which can be viewed as an extended version of the previously proposed Singleton fuzzy modeling paradigm. A set of new back-error propagation (BEP) updating formulas are derived so that they can replace the old set developed in the singleton version. With the substitution, the extension to the multi-objective Mamdani Fuzzy Rule-Based Systems (FRBS) is almost endemic. Due to the carefully chosen output membership functions, the inference and the defuzzification methods, a closed form integral can be deducted for the defuzzification method, which ensures the efficiency of the developed Mamdani FRBS. Some important factors, such as the variable length coding scheme and the rule alignment, are also discussed. Experimental results for a real data set from the steel industry suggest that the proposed approach is capable of eliciting not only accurate but also transparent FRBS with good generalization ability

Recovering complete and draft population genomes from metagenome datasets.

Assembly of metagenomic sequence data into microbial genomes is of fundamental value to improving our understanding of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture microorganisms. Here, we provide a synthesis of available methods to bin metagenomic contigs into species-level groups and highlight how genetic diversity, sequencing depth, and coverage influence binning success. Despite the computational cost on application to deeply sequenced complex metagenomes (e.g., soil), covarying patterns of contig coverage across multiple datasets significantly improves the binning process. We also discuss and compare current genome validation methods and reveal how these methods tackle the problem of chimeric genome bins i.e., sequences from multiple species. Finally, we explore how population genome assembly can be used to uncover biogeographic trends and to characterize the effect of in situ functional constraints on the genome-wide evolution