29th Annual Computational Neuroscience Meeting: CNS*2020

Meeting abstracts This publication was funded by OCNS. The Supplement Editors declare that they have no competing interests. Virtual | 18-22 July 202

Dynamics of spatially extended dendrites

Dendrites are the most visually striking parts of neurons. Even so many neuron models are of point type and have no representation of space. In this thesis we will look at a range of neuronal models with the common property that we always include spatially extended dendrites. First we generalise Abbott’s “sum-over-trips” framework to include resonant currents. We also look at piece-wise linear (PWL) models and extend them to incorporate spatial structure in the form of dendrites. We look at the analytical construction of orbits for PWL models. By using both analytical and numerical Lyapunov exponent methods we explore phase space and in particular we look at mode-locked solutions. We will then construct the phase response curve (PRC) for a PWL system with compartmentally modelled dendrites. This sets us up so we can look at the effect of multiple PWL systems that are weakly coupled through gap junctions. We also attach a continuous dendrite to a PWL soma and investigate how the position of the gap junction influences network properties. After this we will present a short overview of neuronal plasticity with a special focus on the spatial effects. We also discuss attenuation of distal synaptic input and how this can be countered by dendritic democracy as this will become an integral part of our learning mechanisms. We will examine a number of different learning approaches including the tempotron and spike-time dependent plasticity. Here we will consider Poisson’s equation around a neural membrane. The membrane we focus on has Hodgkin-Huxley dynamics so we can study action potential propagation on the membrane. We present the Green’s function for the case of a one-dimensional membrane in a two-dimensional space. This will allow us to examine the action potential initiation and propagation in a multi-dimensional axon

Dynamics of spatially extended dendrites

Dendrites are the most visually striking parts of neurons. Even so many neuron models are of point type and have no representation of space. In this thesis we will look at a range of neuronal models with the common property that we always include spatially extended dendrites. First we generalise Abbott’s “sum-over-trips” framework to include resonant currents. We also look at piece-wise linear (PWL) models and extend them to incorporate spatial structure in the form of dendrites. We look at the analytical construction of orbits for PWL models. By using both analytical and numerical Lyapunov exponent methods we explore phase space and in particular we look at mode-locked solutions. We will then construct the phase response curve (PRC) for a PWL system with compartmentally modelled dendrites. This sets us up so we can look at the effect of multiple PWL systems that are weakly coupled through gap junctions. We also attach a continuous dendrite to a PWL soma and investigate how the position of the gap junction influences network properties. After this we will present a short overview of neuronal plasticity with a special focus on the spatial effects. We also discuss attenuation of distal synaptic input and how this can be countered by dendritic democracy as this will become an integral part of our learning mechanisms. We will examine a number of different learning approaches including the tempotron and spike-time dependent plasticity. Here we will consider Poisson’s equation around a neural membrane. The membrane we focus on has Hodgkin-Huxley dynamics so we can study action potential propagation on the membrane. We present the Green’s function for the case of a one-dimensional membrane in a two-dimensional space. This will allow us to examine the action potential initiation and propagation in a multi-dimensional axon

Stochastic neural network dynamics: synchronisation and control

Biological brains exhibit many interesting and complex behaviours. Understanding of the mechanisms behind brain behaviours is critical for continuing advancement in fields of research such as artificial intelligence and medicine. In particular, synchronisation of neuronal firing is associated with both improvements to and degeneration of the brain’s performance; increased synchronisation can lead to enhanced information-processing or neurological disorders such as epilepsy and Parkinson’s disease. As a result, it is desirable to research under which conditions synchronisation arises in neural networks and the possibility of controlling its prevalence. Stochastic ensembles of FitzHugh-Nagumo elements are used to model neural networks for numerical simulations and bifurcation analysis. The FitzHugh-Nagumo model is employed because of its realistic representation of the flow of sodium and potassium ions in addition to its advantageous property of allowing phase plane dynamics to be observed. Network characteristics such as connectivity, configuration and size are explored to determine their influences on global synchronisation generation in their respective systems. Oscillations in the mean-field are used to detect the presence of synchronisation over a range of coupling strength values. To ensure simulation efficiency, coupling strengths between neurons that are identical and fixed with time are investigated initially. Such networks where the interaction strengths are fixed are referred to as homogeneously coupled. The capacity of controlling and altering behaviours produced by homogeneously coupled networks is assessed through the application of weak and strong delayed feedback independently with various time delays. To imitate learning, the coupling strengths later deviate from one another and evolve with time in networks that are referred to as heterogeneously coupled. The intensity of coupling strength fluctuations and the rate at which coupling strengths converge to a desired mean value are studied to determine their impact upon synchronisation performance. The stochastic delay differential equations governing the numerically simulated networks are then converted into a finite set of deterministic cumulant equations by virtue of the Gaussian approximation method. Cumulant equations for maximal and sub-maximal connectivity are used to generate two-parameter bifurcation diagrams on the noise intensity and coupling strength plane, which provides qualitative agreement with numerical simulations. Analysis of artificial brain networks, in respect to biological brain networks, are discussed in light of recent research in sleep theor

Toward a further understanding of object feature binding: a cognitive neuroscience perspective.

The aim of this thesis is to lead to a further understanding of the neural mechanisms underlying object feature binding in the human brain. The focus is on information processing and integration in the visual system and visual shortterm memory. From a review of the literature it is clear that there are three major competing binding theories, however, none of these individually solves the binding problem satisfactorily. Thus the aim of this research is to conduct behavioural experimentation into object feature binding, paying particular attention to visual short-term memory. The behavioural experiment was designed and conducted using a within-subjects delayed responset ask comprising a battery of sixty-four composite objects each with three features and four dimensions in each of three conditions (spatial, temporal and spatio-temporal).Findings from the experiment,which focus on spatial and temporal aspects of object feature binding and feature proximity on binding errors, support the spatial theories on object feature binding, in addition we propose that temporal theories and convergence, through hierarchical feature analysis, are also involved. Because spatial properties have a dedicated processing neural stream, and temporal properties rely on limited capacity memory systems, memories for sequential information would likely be more difficult to accuratelyr ecall. Our study supports other studies which suggest that both spatial and temporal coherence to differing degrees,may be involved in object feature binding. Traditionally, these theories have purported to provide individual solutions, but this thesis proposes a novel unified theory of object feature binding in which hierarchical feature analysis, spatial attention and temporal synchrony each plays a role. It is further proposed that binding takes place in visual short-term memory through concerted and integrated information processing in distributed cortical areas. A cognitive model detailing this integrated proposal is given. Next, the cognitive model is used to inform the design and suggested implementation of a computational model which would be able to test the theory put forward in this thesis. In order to verify the model, future work is needed to implement the computational model.Thus it is argued that this doctoral thesis provides valuable experimental evidence concerning spatio-temporal aspects of the binding problem and as such is an additional building block in the quest for a solution to the object feature binding problem

Harnessing Neural Dynamics as a Computational Resource

Researchers study nervous systems at levels of scale spanning several orders of magnitude, both in terms of time and space. While some parts of the brain are well understood at specific levels of description, there are few overarching theories that systematically bridge low-level mechanism and high-level function. The Neural Engineering Framework (NEF) is an attempt at providing such a theory. The NEF enables researchers to systematically map dynamical systems—corresponding to some hypothesised brain function—onto biologically constrained spiking neural networks. In this thesis, we present several extensions to the NEF that broaden both the range of neural resources that can be harnessed for spatiotemporal computation and the range of available biological constraints. Specifically, we suggest a method for harnessing the dynamics inherent in passive dendritic trees for computation, allowing us to construct single-layer spiking neural networks that, for some functions, achieve substantially lower errors than larger multi-layer networks. Furthermore, we suggest “temporal tuning” as a unifying approach to harnessing temporal resources for computation through time. This allows modellers to directly constrain networks to temporal tuning observed in nature, in ways not previously well-supported by the NEF. We then explore specific examples of neurally plausible dynamics using these techniques. In particular, we propose a new “information erasure” technique for constructing LTI systems generating temporal bases. Such LTI systems can be used to establish an optimal basis for spatiotemporal computation. We demonstrate how this captures “time cells” that have been observed throughout the brain. As well, we demonstrate the viability of our extensions by constructing an adaptive filter model of the cerebellum that successfully reproduces key features of eyeblink conditioning observed in neurobiological experiments. Outside the cognitive sciences, our work can help exploit resources available on existing neuromorphic computers, and inform future neuromorphic hardware design. In machine learning, our spatiotemporal NEF populations map cleanly onto the Legendre Memory Unit (LMU), a promising artificial neural network architecture for stream-to-stream processing that outperforms competing approaches. We find that one of our LTI systems derived through “information erasure” may serve as a computationally less expensive alternative to the LTI system commonly used in the LMU

Toward a further understanding of object feature binding : a cognitive neuroscience perspective

The aim of this thesis is to lead to a further understanding of the neural mechanisms underlying object feature binding in the human brain. The focus is on information processing and integration in the visual system and visual shortterm memory. From a review of the literature it is clear that there are three major competing binding theories, however, none of these individually solves the binding problem satisfactorily. Thus the aim of this research is to conduct behavioural experimentation into object feature binding, paying particular attention to visual short-term memory. The behavioural experiment was designed and conducted using a within-subjects delayed responset ask comprising a battery of sixty-four composite objects each with three features and four dimensions in each of three conditions (spatial, temporal and spatio-temporal).Findings from the experiment,which focus on spatial and temporal aspects of object feature binding and feature proximity on binding errors, support the spatial theories on object feature binding, in addition we propose that temporal theories and convergence, through hierarchical feature analysis, are also involved. Because spatial properties have a dedicated processing neural stream, and temporal properties rely on limited capacity memory systems, memories for sequential information would likely be more difficult to accuratelyr ecall. Our study supports other studies which suggest that both spatial and temporal coherence to differing degrees,may be involved in object feature binding. Traditionally, these theories have purported to provide individual solutions, but this thesis proposes a novel unified theory of object feature binding in which hierarchical feature analysis, spatial attention and temporal synchrony each plays a role. It is further proposed that binding takes place in visual short-term memory through concerted and integrated information processing in distributed cortical areas. A cognitive model detailing this integrated proposal is given. Next, the cognitive model is used to inform the design and suggested implementation of a computational model which would be able to test the theory put forward in this thesis. In order to verify the model, future work is needed to implement the computational model.Thus it is argued that this doctoral thesis provides valuable experimental evidence concerning spatio-temporal aspects of the binding problem and as such is an additional building block in the quest for a solution to the object feature binding problem.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 - Meeting Abstracts - Antwerp, Belgium. 15–20 July 2017

This work was produced as part of the activities of FAPESP Research,\ud Disseminations and Innovation Center for Neuromathematics (grant\ud 2013/07699-0, S. Paulo Research Foundation). NLK is supported by a\ud FAPESP postdoctoral fellowship (grant 2016/03855-5). ACR is partially\ud supported by a CNPq fellowship (grant 306251/2014-0)

Epilepsy

Epilepsy is the most common neurological disorder globally, affecting approximately 50 million people of all ages. It is one of the oldest diseases described in literature from remote ancient civilizations 2000-3000 years ago. Despite its long history and wide spread, epilepsy is still surrounded by myth and prejudice, which can only be overcome with great difficulty. The term epilepsy is derived from the Greek verb epilambanein, which by itself means to be seized and to be overwhelmed by surprise or attack. Therefore, epilepsy is a condition of getting over, seized, or attacked. The twelve very interesting chapters of this book cover various aspects of epileptology from the history and milestones of epilepsy as a disease entity, to the most recent advances in understanding and diagnosing epilepsy