Trusted resource allocation in volunteer edge-cloud computing for scientific applications

Data-intensive science applications in fields such as e.g., bioinformatics, health sciences, and material discovery are becoming increasingly dynamic and demanding with resource requirements. Researchers using these applications which are based on advanced scientific workflows frequently require a diverse set of resources that are often not available within private servers or a single Cloud Service Provider (CSP). For example, a user working with Precision Medicine applications would prefer only those CSPs who follow guidelines from HIPAA (Health Insurance Portability and Accountability Act) for implementing their data services and might want services from other CSPs for economic viability. With the generation of more and more data these workflows often require deployment and dynamic scaling of multi-cloud resources in an efficient and high-performance manner (e.g., quick setup, reduced computation time, and increased application throughput). At the same time, users seek to minimize the costs of configuring the related multi-cloud resources. While performance and cost are among the key factors to decide upon CSP resource selection, the scientific workflows often process proprietary/confidential data that introduces additional constraints of security postures. Thus, users have to make an informed decision on the selection of resources that are most suited for their applications while trading off between the key factors of resource selection which are performance, agility, cost, and security (PACS). Furthermore, even with the most efficient resource allocation across multi-cloud, the cost to solution might not be economical for all users which have led to the development of new paradigms of computing such as volunteer computing where users utilize volunteered cyber resources to meet their computing requirements. For economical and readily available resources, it is essential that such volunteered resources can integrate well with cloud resources for providing the most efficient computing infrastructure for users. In this dissertation, individual stages such as user requirement collection, user's resource preferences, resource brokering and task scheduling, in lifecycle of resource brokering for users are tackled. For collection of user requirements, a novel approach through an iterative design interface is proposed. In addition, fuzzy interference-based approach is proposed to capture users' biases and expertise for guiding their resource selection for their applications. The results showed improvement in performance i.e. time to execute in 98 percent of the studied applications. The data collected on user's requirements and preferences is later used by optimizer engine and machine learning algorithms for resource brokering. For resource brokering, a new integer linear programming based solution (OnTimeURB) is proposed which creates multi-cloud template solutions for resource allocation while also optimizing performance, agility, cost, and security. The solution was further improved by the addition of a machine learning model based on naive bayes classifier which captures the true QoS of cloud resources for guiding template solution creation. The proposed solution was able to improve the time to execute for as much as 96 percent of the largest applications. As discussed above, to fulfill necessity of economical computing resources, a new paradigm of computing viz-a-viz Volunteer Edge Computing (VEC) is proposed which reduces cost and improves performance and security by creating edge clusters comprising of volunteered computing resources close to users. The initial results have shown improved time of execution for application workflows against state-of-the-art solutions while utilizing only the most secure VEC resources. Consequently, we have utilized reinforcement learning based solutions to characterize volunteered resources for their availability and flexibility towards implementation of security policies. The characterization of volunteered resources facilitates efficient allocation of resources and scheduling of workflows tasks which improves performance and throughput of workflow executions. VEC architecture is further validated with state-of-the-art bioinformatics workflows and manufacturing workflows.Includes bibliographical references

Partitioning workflow applications over federated clouds to meet non-functional requirements

PhD ThesisWith cloud computing, users can acquire computer resources when they need them on a pay-as-you-go business model. Because of this, many applications are now being deployed in the cloud, and there are many di erent cloud providers worldwide. Importantly, all these various infrastructure providers o er services with di erent levels of quality. For example, cloud data centres are governed by the privacy and security policies of the country where the centre is located, while many organisations have created their own internal \private cloud" to meet security needs. With all this varieties and uncertainties, application developers who decide to host their system in the cloud face the issue of which cloud to choose to get the best operational conditions in terms of price, reliability and security. And the decision becomes even more complicated if their application consists of a number of distributed components, each with slightly di erent requirements. Rather than trying to identify the single best cloud for an application, this thesis considers an alternative approach, that is, combining di erent clouds to meet users' non-functional requirements. Cloud federation o ers the ability to distribute a single application across two or more clouds, so that the application can bene t from the advantages of each one of them. The key challenge for this approach is how to nd the distribution (or deployment) of application components, which can yield the greatest bene ts. In this thesis, we tackle this problem and propose a set of algorithms, and a framework, to partition a work ow-based application over federated clouds in order to exploit the strengths of each cloud. The speci c goal is to split a distributed application structured as a work ow such that the security and reliability requirements of each component are met, whilst the overall cost of execution is minimised. To achieve this, we propose and evaluate a cloud broker for partitioning a work ow application over federated clouds. The broker integrates with the e-Science Central cloud platform to automatically deploy a work ow over public and private clouds. We developed a deployment planning algorithm to partition a large work ow appli- - i - cation across federated clouds so as to meet security requirements and minimise the monetary cost. A more generic framework is then proposed to model, quantify and guide the partitioning and deployment of work ows over federated clouds. This framework considers the situation where changes in cloud availability (including cloud failure) arise during work ow execution

Data integration and FAIR data management in Solid Earth Science

Integrated use of multidisciplinary data is nowadays a recognized trend in scientific research, in particular in the domain of solid Earth science where the understanding of a physical process is improved and made complete by different types of measurements – for instance, ground acceleration, SAR imaging, crustal deformation – describing a physical phenomenon. FAIR principles are recognized as a means to foster data integration by providing a common set of criteria for building data stewardship systems for Open Science. However, the implementation of FAIR principles raises issues along dimensions like governance and legal beyond, of course, the technical one. In the latter, in particular, the development of FAIR data provision systems is often delegated to Research Infrastructures or data providers, with support in terms of metrics and best practices offered by cluster projects or dedicated initiatives. In the current work, we describe the approach to FAIR data management in the European Plate Observing System (EPOS), a distributed research infrastructure in the solid Earth science domain that includes more than 250 individual research infrastructures across 25 countries in Europe. We focus in particular on the technical aspects, but including also governance, policies and organizational elements, by describing the architecture of the EPOS delivery framework both from the organizational and technical point of view and by outlining the key principles used in the technical design. We describe how a combination of approaches, namely rich metadata and service-based systems design, are required to achieve data integration. We show the system architecture and the basic features of the EPOS data portal, that integrates data from more than 220 services in a FAIR way. The construction of such a portal was driven by the EPOS FAIR data management approach, that by defining a clear roadmap for compliance with the FAIR principles, produced a number of best practices and technical approaches for complying with the FAIR principles. Such a work, that spans over a decade but concentrates the key efforts in the last 5 years with the EPOS Implementation Phase project and the establishment of EPOS-ERIC, was carried out in synergy with other EU initiatives dealing with FAIR data. On the basis of the EPOS experience, future directions are outlined, emphasizing the need to provide i) FAIR reference architectures that can ease data practitioners and engineers from the domain communities to adopt FAIR principles and build FAIR data systems; ii) a FAIR data management framework addressing FAIR through the entire data lifecycle, including reproducibility and provenance; and iii) the extension of the FAIR principles to policies and governance dimensions.publishedVersio

Survey and Analysis of Production Distributed Computing Infrastructures

This report has two objectives. First, we describe a set of the production distributed infrastructures currently available, so that the reader has a basic understanding of them. This includes explaining why each infrastructure was created and made available and how it has succeeded and failed. The set is not complete, but we believe it is representative. Second, we describe the infrastructures in terms of their use, which is a combination of how they were designed to be used and how users have found ways to use them. Applications are often designed and created with specific infrastructures in mind, with both an appreciation of the existing capabilities provided by those infrastructures and an anticipation of their future capabilities. Here, the infrastructures we discuss were often designed and created with specific applications in mind, or at least specific types of applications. The reader should understand how the interplay between the infrastructure providers and the users leads to such usages, which we call usage modalities. These usage modalities are really abstractions that exist between the infrastructures and the applications; they influence the infrastructures by representing the applications, and they influence the ap- plications by representing the infrastructures

Efficient multilevel scheduling in grids and clouds with dynamic provisioning

Tesis de la Universidad Complutense de Madrid, Facultad de Informática, Departamento de Arquitectura de Computadores y Automática, leída el 12-01-2016La consolidación de las grandes infraestructuras para la Computación Distribuida ha resultado en una plataforma de Computación de Alta Productividad que está lista para grandes cargas de trabajo. Los mejores exponentes de este proceso son las federaciones grid actuales. Por otro lado, la Computación Cloud promete ser más flexible, utilizable, disponible y simple que la Computación Grid, cubriendo además muchas más necesidades computacionales que las requeridas para llevar a cabo cálculos distribuidos. En cualquier caso, debido al dinamismo y la heterogeneidad presente en grids y clouds, encontrar la asignación ideal de las tareas computacionales en los recursos disponibles es, por definición un problema NP-completo, y sólo se pueden encontrar soluciones subóptimas para estos entornos. Sin embargo, la caracterización de estos recursos en ambos tipos de infraestructuras es deficitaria. Los sistemas de información disponibles no proporcionan datos fiables sobre el estado de los recursos, lo cual no permite la planificación avanzada que necesitan los diferentes tipos de aplicaciones distribuidas. Durante la última década esta cuestión no ha sido resuelta para la Computación Grid y las infraestructuras cloud establecidas recientemente presentan el mismo problema. En este marco, los planificadores (brokers) sólo pueden mejorar la productividad de las ejecuciones largas, pero no proporcionan ninguna estimación de su duración. La planificación compleja ha sido abordada tradicionalmente por otras herramientas como los gestores de flujos de trabajo, los auto-planificadores o los sistemas de gestión de producción pertenecientes a ciertas comunidades de investigación. Sin embargo, el bajo rendimiento obtenido con estos mecanismos de asignación anticipada (early-binding) es notorio. Además, la diversidad en los proveedores cloud, la falta de soporte de herramientas de planificación y de interfaces de programación estandarizadas para distribuir la carga de trabajo, dificultan la portabilidad masiva de aplicaciones legadas a los entornos cloud...The consolidation of large Distributed Computing infrastructures has resulted in a High-Throughput Computing platform that is ready for high loads, whose best proponents are the current grid federations. On the other hand, Cloud Computing promises to be more flexible, usable, available and simple than Grid Computing, covering also much more computational needs than the ones required to carry out distributed calculations. In any case, because of the dynamism and heterogeneity that are present in grids and clouds, calculating the best match between computational tasks and resources in an effectively characterised infrastructure is, by definition, an NP-complete problem, and only sub-optimal solutions (schedules) can be found for these environments. Nevertheless, the characterisation of the resources of both kinds of infrastructures is far from being achieved. The available information systems do not provide accurate data about the status of the resources that can allow the advanced scheduling required by the different needs of distributed applications. The issue was not solved during the last decade for grids and the cloud infrastructures recently established have the same problem. In this framework, brokers only can improve the throughput of very long calculations, but do not provide estimations of their duration. Complex scheduling was traditionally tackled by other tools such as workflow managers, self-schedulers and the production management systems of certain research communities. Nevertheless, the low performance achieved by these earlybinding methods is noticeable. Moreover, the diversity of cloud providers and mainly, their lack of standardised programming interfaces and brokering tools to distribute the workload, hinder the massive portability of legacy applications to cloud environments...Depto. de Arquitectura de Computadores y AutomáticaFac. de InformáticaTRUEsubmitte