8,521 research outputs found
A Method to Improve the Analysis of Cluster Ensembles
Clustering is fundamental to understand the structure of data. In the past decade the cluster ensembleproblem has been introduced, which combines a set of partitions (an ensemble) of the data to obtain a singleconsensus solution that outperforms all the ensemble members. However, there is disagreement about which arethe best ensemble characteristics to obtain a good performance: some authors have suggested that highly differentpartitions within the ensemble are beneï¬ cial for the ï¬ nal performance, whereas others have stated that mediumdiversity among them is better. While there are several measures to quantify the diversity, a better method toanalyze the best ensemble characteristics is necessary. This paper introduces a new ensemble generation strategyand a method to make slight changes in its structure. Experimental results on six datasets suggest that this isan important step towards a more systematic approach to analyze the impact of the ensemble characteristics onthe overall consensus performance.Fil: Pividori, Milton Damián. Universidad Tecnologica Nacional. Facultad Regional Santa Fe. Centro de Investigacion y Desarrollo de Ingenieria en Sistemas de Informacion; Argentina. Consejo Nacional de Investigaciones CientÃficas y Técnicas. Centro CientÃfico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de IngenierÃa y Ciencias HÃdricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Stegmayer, Georgina. Consejo Nacional de Investigaciones CientÃficas y Técnicas. Centro CientÃfico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de IngenierÃa y Ciencias HÃdricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentina. Universidad Tecnologica Nacional. Facultad Regional Santa Fe. Centro de Investigacion y Desarrollo de Ingenieria en Sistemas de Informacion; ArgentinaFil: Milone, Diego Humberto. Consejo Nacional de Investigaciones CientÃficas y Técnicas. Centro CientÃfico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de IngenierÃa y Ciencias HÃdricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentin
A Comparative Analysis of Ensemble Classifiers: Case Studies in Genomics
The combination of multiple classifiers using ensemble methods is
increasingly important for making progress in a variety of difficult prediction
problems. We present a comparative analysis of several ensemble methods through
two case studies in genomics, namely the prediction of genetic interactions and
protein functions, to demonstrate their efficacy on real-world datasets and
draw useful conclusions about their behavior. These methods include simple
aggregation, meta-learning, cluster-based meta-learning, and ensemble selection
using heterogeneous classifiers trained on resampled data to improve the
diversity of their predictions. We present a detailed analysis of these methods
across 4 genomics datasets and find the best of these methods offer
statistically significant improvements over the state of the art in their
respective domains. In addition, we establish a novel connection between
ensemble selection and meta-learning, demonstrating how both of these disparate
methods establish a balance between ensemble diversity and performance.Comment: 10 pages, 3 figures, 8 tables, to appear in Proceedings of the 2013
International Conference on Data Minin
LinkCluE: A MATLAB Package for Link-Based Cluster Ensembles
Cluster ensembles have emerged as a powerful meta-learning paradigm that provides improved accuracy and robustness by aggregating several input data clusterings. In particular, link-based similarity methods have recently been introduced with superior performance to the conventional co-association approach. This paper presents a MATLAB package, LinkCluE, that implements the link-based cluster ensemble framework. A variety of functional methods for evaluating clustering results, based on both internal and external criteria, are also provided. Additionally, the underlying algorithms together with the sample uses of the package with interesting real and synthetic datasets are demonstrated herein.
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