Retargeting of existing FORTRAN program and development of parallel compilers

The software models used in implementing the parallelizing compiler for the B-HIVE multiprocessor system are described. The various models and strategies used in the compiler development are: flexible granularity model, which allows a compromise between two extreme granularity models; communication model, which is capable of precisely describing the interprocessor communication timings and patterns; loop type detection strategy, which identifies different types of loops; critical path with coloring scheme, which is a versatile scheduling strategy for any multicomputer with some associated communication costs; and loop allocation strategy, which realizes optimum overlapped operations between computation and communication of the system. Using these models, several sample routines of the AIR3D package are examined and tested. It may be noted that automatically generated codes are highly parallelized to provide the maximized degree of parallelism, obtaining the speedup up to a 28 to 32-processor system. A comparison of parallel codes for both the existing and proposed communication model, is performed and the corresponding expected speedup factors are obtained. The experimentation shows that the B-HIVE compiler produces more efficient codes than existing techniques. Work is progressing well in completing the final phase of the compiler. Numerous enhancements are needed to improve the capabilities of the parallelizing compiler

Automatically Leveraging MapReduce Frameworks for Data-Intensive Applications

MapReduce is a popular programming paradigm for developing large-scale, data-intensive computation. Many frameworks that implement this paradigm have recently been developed. To leverage these frameworks, however, developers must become familiar with their APIs and rewrite existing code. Casper is a new tool that automatically translates sequential Java programs into the MapReduce paradigm. Casper identifies potential code fragments to rewrite and translates them in two steps: (1) Casper uses program synthesis to search for a program summary (i.e., a functional specification) of each code fragment. The summary is expressed using a high-level intermediate language resembling the MapReduce paradigm and verified to be semantically equivalent to the original using a theorem prover. (2) Casper generates executable code from the summary, using either the Hadoop, Spark, or Flink API. We evaluated Casper by automatically converting real-world, sequential Java benchmarks to MapReduce. The resulting benchmarks perform up to 48.2x faster compared to the original.Comment: 12 pages, additional 4 pages of references and appendi

Hadoop performance modeling and job optimization for big data analytics

This thesis was submitted for the award of Doctor of Philosophy and was awarded by Brunel University LondonBig data has received a momentum from both academia and industry. The MapReduce model has emerged into a major computing model in support of big data analytics. Hadoop, which is an open source implementation of the MapReduce model, has been widely taken up by the community. Cloud service providers such as Amazon EC2 cloud have now supported Hadoop user applications. However, a key challenge is that the cloud service providers do not a have resource provisioning mechanism to satisfy user jobs with deadline requirements. Currently, it is solely the user responsibility to estimate the require amount of resources for their job running in a public cloud. This thesis presents a Hadoop performance model that accurately estimates the execution duration of a job and further provisions the required amount of resources for a job to be completed within a deadline. The proposed model employs Locally Weighted Linear Regression (LWLR) model to estimate execution time of a job and Lagrange Multiplier technique for resource provisioning to satisfy user job with a given deadline. The performance of the propose model is extensively evaluated in both in-house Hadoop cluster and Amazon EC2 Cloud. Experimental results show that the proposed model is highly accurate in job execution estimation and jobs are completed within the required deadlines following on the resource provisioning scheme of the proposed model. In addition, the Hadoop framework has over 190 configuration parameters and some of them have significant effects on the performance of a Hadoop job. Manually setting the optimum values for these parameters is a challenging task and also a time consuming process. This thesis presents optimization works that enhances the performance of Hadoop by automatically tuning its parameter values. It employs Gene Expression Programming (GEP) technique to build an objective function that represents the performance of a job and the correlation among the configuration parameters. For the purpose of optimization, Particle Swarm Optimization (PSO) is employed to find automatically an optimal or a near optimal configuration settings. The performance of the proposed work is intensively evaluated on a Hadoop cluster and the experimental results show that the proposed work enhances the performance of Hadoop significantly compared with the default settings.Abdul Wali Khan University Marda

Performance Comparison Of Two Data Mining Algorithms On Big Data Platforms

In this Big data era, the need for performing large-scale computations is evident. A better understanding of the most suitable platforms which can efficiently run these computations is needed. In this thesis, we attempt to compare four such big data platforms, namely Hadoop, Spark, GPU, and Multicore CPU. We compare these platforms using two prominent data mining algorithms, namely, K-means clustering and K-nearest neighbour classification and discuss specific implementation-level details. We provide several insights into the best possible implementations of these algorithms and systematically compare the benefits and drawbacks of each of these platforms. We conduct experiments by varying data size and parameters to obtain runtime and scalability performances of these platforms. Our experiments show that GPU and Multicore CPU are faster but have certain limitations. On the other hand, Hadoop and Spark are able to handle large scale datasets. We also observe that Spark performs better than Hadoop for both iterative and non-iterative jobs. In summary, we have examined different characteristics of four big data platforms and provided comparative analysis for the cases of two algorithms. Since many other data mining algorithms either use these two methods during pre-processing or as an integral component, we hope that our analysis will have impact in many other applications and algorithms beyond the ones that are being reported in this thesis

Facilitating High Performance Code Parallelization

With the surge of social media on one hand and the ease of obtaining information due to cheap sensing devices and open source APIs on the other hand, the amount of data that can be processed is as well vastly increasing. In addition, the world of computing has recently been witnessing a growing shift towards massively parallel distributed systems due to the increasing importance of transforming data into knowledge in today’s data-driven world. At the core of data analysis for all sorts of applications lies pattern matching. Therefore, parallelizing pattern matching algorithms should be made efficient in order to cater to this ever-increasing abundance of data. We propose a method that automatically detects a user’s single threaded function call to search for a pattern using Java’s standard regular expression library, and replaces it with our own data parallel implementation using Java bytecode injection. Our approach facilitates parallel processing on different platforms consisting of shared memory systems (using multithreading and NVIDIA GPUs) and distributed systems (using MPI and Hadoop). The major contributions of our implementation consist of reducing the execution time while at the same time being transparent to the user. In addition to that, and in the same spirit of facilitating high performance code parallelization, we present a tool that automatically generates Spark Java code from minimal user-supplied inputs. Spark has emerged as the tool of choice for efficient big data analysis. However, users still have to learn the complicated Spark API in order to write even a simple application. Our tool is easy to use, interactive and offers Spark’s native Java API performance. To the best of our knowledge and until the time of this writing, such a tool has not been yet implemented

협업 로봇을 위한 서비스 기반과 모델 기반의 소프트웨어 개발 방법론

학위논문(박사)--서울대학교 대학원 :공과대학 전기·컴퓨터공학부,2020. 2. 하순회.가까운 미래에는 다양한 로봇이 다양한 분야에서 하나의 임무를 협력하여 수행하는 모습은 흔히 볼 수 있게 될 것이다. 그러나 실제로 이러한 모습이 실현되기에는 두 가지의 어려움이 있다. 먼저 로봇을 운용하기 위한 소프트웨어를 명세하는 기존 연구들은 대부분 개발자가 로봇의 하드웨어와 소프트웨어에 대한 지식을 알고 있는 것을 가정하고 있다. 그래서 로봇이나 컴퓨터에 대한 지식이 없는 사용자들이 여러 대의 로봇이 협력하는 시나리오를 작성하기는 쉽지 않다. 또한, 로봇의 소프트웨어를 개발할 때 로봇의 하드웨어의 특성과 관련이 깊어서, 다양한 로봇의 소프트웨어를 개발하는 것도 간단하지 않다. 본 논문에서는 상위 수준의 미션 명세와 로봇의 행위 프로그래밍으로 나누어 새로운 소프트웨어 개발 프레임워크를 제안한다. 또한, 본 프레임워크는 크기가 작은 로봇부터 계산 능력이 충분한 로봇들이 서로 군집을 이루어 미션을 수행할 수 있도록 지원한다. 본 연구에서는 로봇의 하드웨어나 소프트웨어에 대한 지식이 부족한 사용자도 로봇의 동작을 상위 수준에서 명세할 수 있는 스크립트 언어를 제안한다. 제안하는 언어는 기존의 스크립트 언어에서는 지원하지 않는 네 가지의 기능인 팀의 구성, 각 팀의 서비스 기반 프로그래밍, 동적으로 모드 변경, 다중 작업(멀티 태스킹)을 지원한다. 우선 로봇은 팀으로 그룹 지을 수 있고, 로봇이 수행할 수 있는 기능을 서비스 단위로 추상화하여 새로운 복합 서비스를 명세할 수 있다. 또한 로봇의 멀티 태스킹을 위해 '플랜' 이라는 개념을 도입하였고, 복합 서비스 내에서 이벤트를 발생시켜서 동적으로 모드가 변환할 수 있도록 하였다. 나아가 여러 로봇의 협력이 더욱 견고하고, 유연하고, 확장성을 높이기 위해, 군집 로봇을 운용할 때 로봇이 임무를 수행하는 도중에 문제가 생길 수 있으며, 상황에 따라 로봇을 동적으로 다른 행위를 수행할 수 있다고 가정한다. 이를 위해 동적으로도 팀을 구성할 수 있고, 여러 대의 로봇이 하나의 서비스를 수행하는 그룹 서비스를 지원하고, 일대 다 통신과 같은 새로운 기능을 스크립트 언어에 반영하였다. 따라서 확장된 상위 수준의 스크립트 언어는 비전문가도 다양한 유형의 협력 임무를 쉽게 명세할 수 있다. 로봇의 행위를 프로그래밍하기 위해 다양한 소프트웨어 개발 프레임워크가 연구되고 있다. 특히 재사용성과 확장성을 중점으로 둔 연구들이 최근 많이 사용되고 있지만, 대부분의 이들 연구는 리눅스 운영체제와 같이 많은 하드웨어 자원을 필요로 하는 운영체제를 가정하고 있다. 또한, 프로그램의 분석 및 성능 예측 등을 고려하지 않기 때문에, 자원 제약이 심한 크기가 작은 로봇의 소프트웨어를 개발하기에는 어렵다. 그래서 본 연구에서는 임베디드 소프트웨어를 설계할 때 쓰이는 정형적인 모델을 이용한다. 이 모델은 정적 분석과 성능 예측이 가능하지만, 로봇의 행위를 표현하기에는 제약이 있다. 그래서 본 논문에서 외부의 이벤트에 의해 수행 중간에 행위를 변경하는 로봇을 위해 유한 상태 머신 모델과 데이터 플로우 모델이 결합하여 동적 행위를 명세할 수 있는 확장된 모델을 적용한다. 그리고 딥러닝과 같이 계산량을 많이 필요로 하는 응용을 분석하기 위해, 루프 구조를 명시적으로 표현할 수 있는 모델을 제안한다. 마지막으로 여러 로봇의 협업 운용을 위해 로봇 사이에 공유되는 정보를 나타내기 위해 두 가지 모델을 사용한다. 먼저 중앙에서 공유 정보를 관리하기 위해 라이브러리 태스크라는 특별한 태스크를 통해 공유 정보를 나타낸다. 또한, 로봇이 자신의 정보를 가까운 로봇들과 공유하기 위해 멀티캐스팅을 위한 새로운 포트를 추가한다. 이렇게 확장된 정형적인 모델은 실제 로봇 코드로 자동 생성되어, 소프트웨어 설계 생산성 및 개발 효율성에 이점을 가진다. 비전문가가 명세한 스크립트 언어는 정형적인 태스크 모델로 변환하기 위해 중간 단계인 전략 단계를 추가하였다. 제안하는 방법론의 타당성을 검증하기 위해, 시뮬레이션과 여러 대의 실제 로봇을 이용한 협업하는 시나리오에 대해 실험을 진행하였다.In the near future, it will be common that a variety of robots are cooperating to perform a mission in various fields. There are two software challenges when deploying collaborative robots: how to specify a cooperative mission and how to program each robot to accomplish its mission. In this paper, we propose a novel software development framework that separates mission specification and robot behavior programming, which is called service-oriented and model-based (SeMo) framework. Also, it can support distributed robot systems, swarm robots, and their hybrid. For mission specification, a novel scripting language is proposed with the expression capability. It involves team composition and service-oriented behavior specification of each team, allowing dynamic mode change of operation and multi-tasking. Robots are grouped into teams, and the behavior of each team is defined with a composite service. The internal behavior of a composite service is defined by a sequence of services that the robots will perform. The notion of plan is applied to express multi-tasking. And the robot may have various operating modes, so mode change is triggered by events generated in a composite service. Moreover, to improve the robustness, scalability, and flexibility of robot collaboration, the high-level mission scripting language is extended with new features such as team hierarchy, group service, one-to-many communication. We assume that any robot fails during the execution of scenarios, and the grouping of robots can be made at run-time dynamically. Therefore, the extended mission specification enables a casual user to specify various types of cooperative missions easily. For robot behavior programming, an extended dataflow model is used for task-level behavior specification that does not depend on the robot hardware platform. To specify the dynamic behavior of the robot, we apply an extended task model that supports a hybrid specification of dataflow and finite state machine models. Furthermore, we propose a novel extension to allow the explicit specification of loop structures. This extension helps the compute-intensive application, which contains a lot of loop structures, to specify explicitly and analyze at compile time. Two types of information sharing, global information sharing and local knowledge sharing, are supported for robot collaboration in the dataflow graph. For global information, we use the library task, which supports shared resource management and server-client interaction. On the other hand, to share information locally with near robots, we add another type of port for multicasting and use the knowledge sharing technique. The actual robot code per robot is automatically generated from the associated task graph, which minimizes the human efforts in low-level robot programming and improves the software design productivity significantly. By abstracting the tasks or algorithms as services and adding the strategy description layer in the design flow, the mission specification is refined into task-graph specification automatically. The viability of the proposed methodology is verified with preliminary experiments with three cooperative mission scenarios with heterogeneous robot platforms and robot simulator.Chapter 1. Introduction 1 1.1 Motivation 1 1.2 Contribution 7 1.3 Dissertation Organization 9 Chapter 2. Background and Existing Research 11 2.1 Terminologies 11 2.2 Robot Software Development Frameworks 25 2.3 Parallel Embedded Software Development Framework 31 Chapter 3. Overview of the SeMo Framework 41 3.1 Motivational Examples 45 Chapter 4. Robot Behavior Programming 47 4.1 Related works 48 4.2 Model-based Task Graph Specification for Individual Robots 56 4.3 Model-based Task Graph Specification for Cooperating Robots 70 4.4 Automatic Code Generation 74 4.5 Experiments 78 Chapter 5. High-level Mission Specification 81 5.1 Service-oriented Mission Specification 82 5.2 Strategy Description 93 5.3 Automatic Task Graph Generation 96 5.4 Related works 99 5.5 Experiments 104 Chapter 6. Conclusion 114 6.1 Future Research 116 Bibliography 118 Appendices 133 요약 158Docto

Architectures and GPU-Based Parallelization for Online Bayesian Computational Statistics and Dynamic Modeling

Recent work demonstrates that coupling Bayesian computational statistics methods with dynamic models can facilitate the analysis of complex systems associated with diverse time series, including those involving social and behavioural dynamics. Particle Markov Chain Monte Carlo (PMCMC) methods constitute a particularly powerful class of Bayesian methods combining aspects of batch Markov Chain Monte Carlo (MCMC) and the sequential Monte Carlo method of Particle Filtering (PF). PMCMC can flexibly combine theory-capturing dynamic models with diverse empirical data. Online machine learning is a subcategory of machine learning algorithms characterized by sequential, incremental execution as new data arrives, which can give updated results and predictions with growing sequences of available incoming data. While many machine learning and statistical methods are adapted to online algorithms, PMCMC is one example of the many methods whose compatibility with and adaption to online learning remains unclear. In this thesis, I proposed a data-streaming solution supporting PF and PMCMC methods with dynamic epidemiological models and demonstrated several successful applications. By constructing an automated, easy-to-use streaming system, analytic applications and simulation models gain access to arriving real-time data to shorten the time gap between data and resulting model-supported insight. The well-defined architecture design emerging from the thesis would substantially expand traditional simulation models' potential by allowing such models to be offered as continually updated services. Contingent on sufficiently fast execution time, simulation models within this framework can consume the incoming empirical data in real-time and generate informative predictions on an ongoing basis as new data points arrive. In a second line of work, I investigated the platform's flexibility and capability by extending this system to support the use of a powerful class of PMCMC algorithms with dynamic models while ameliorating such algorithms' traditionally stiff performance limitations. Specifically, this work designed and implemented a GPU-enabled parallel version of a PMCMC method with dynamic simulation models. The resulting codebase readily has enabled researchers to adapt their models to the state-of-art statistical inference methods, and ensure that the computation-heavy PMCMC method can perform significant sampling between the successive arrival of each new data point. Investigating this method's impact with several realistic PMCMC application examples showed that GPU-based acceleration allows for up to 160x speedup compared to a corresponding CPU-based version not exploiting parallelism. The GPU accelerated PMCMC and the streaming processing system can complement each other, jointly providing researchers with a powerful toolset to greatly accelerate learning and securing additional insight from the high-velocity data increasingly prevalent within social and behavioural spheres. The design philosophy applied supported a platform with broad generalizability and potential for ready future extensions. The thesis discusses common barriers and difficulties in designing and implementing such systems and offers solutions to solve or mitigate them