Knowledge Organization Systems (KOS) in the Semantic Web: A Multi-Dimensional Review

Since the Simple Knowledge Organization System (SKOS) specification and its SKOS eXtension for Labels (SKOS-XL) became formal W3C recommendations in 2009 a significant number of conventional knowledge organization systems (KOS) (including thesauri, classification schemes, name authorities, and lists of codes and terms, produced before the arrival of the ontology-wave) have made their journeys to join the Semantic Web mainstream. This paper uses "LOD KOS" as an umbrella term to refer to all of the value vocabularies and lightweight ontologies within the Semantic Web framework. The paper provides an overview of what the LOD KOS movement has brought to various communities and users. These are not limited to the colonies of the value vocabulary constructors and providers, nor the catalogers and indexers who have a long history of applying the vocabularies to their products. The LOD dataset producers and LOD service providers, the information architects and interface designers, and researchers in sciences and humanities, are also direct beneficiaries of LOD KOS. The paper examines a set of the collected cases (experimental or in real applications) and aims to find the usages of LOD KOS in order to share the practices and ideas among communities and users. Through the viewpoints of a number of different user groups, the functions of LOD KOS are examined from multiple dimensions. This paper focuses on the LOD dataset producers, vocabulary producers, and researchers (as end-users of KOS).Comment: 31 pages, 12 figures, accepted paper in International Journal on Digital Librarie

Ontology-based knowledge representation and semantic search information retrieval: case study of the underutilized crops domain

The aim of using semantic technologies in domain knowledge modeling is to introduce the semantic meaning of concepts in knowledge bases, such that they are both human-readable as well as machine-understandable. Due to their powerful knowledge representation formalism and associated inference mechanisms, ontology-based approaches have been increasingly adopted to formally represent domain knowledge. The primary objective of this thesis work has been to use semantic technologies in advancing knowledge-sharing of Underutilized crops as a domain and investigate the integration of underlying ontologies developed in OWL (Web Ontology Language) with augmented SWRL (Semantic Web Rule Language) rules for added expressiveness. The work further investigated generating ontologies from existing data sources and proposed the reverse-engineering approach of generating domain specific conceptualization through competency questions posed from possible ontology users and domain experts. For utilization, a semantic search engine (the Onto-CropBase) has been developed to serve as a Web-based access point for the Underutilized crops ontology model. Relevant linked-data in Resource Description Framework Schema (RDFS) were added for comprehensiveness in generating federated queries. While the OWL/SWRL combination offers a highly expressive ontology language for modeling knowledge domains, the combination is found to be lacking supplementary descriptive constructs to model complex real-life scenarios, a necessary requirement for a successful Semantic Web application. To this end, the common logic programming formalisms for extending Description Logic (DL)-based ontologies were explored and the state of the art in SWRL expressiveness extensions determined with a view to extending the SWRL formalism. Subsequently, a novel fuzzy temporal extension to the Semantic Web Rule Language (FT-SWRL), which combines SWRL with fuzzy logic theories based on the valid-time temporal model, has been proposed to allow modeling imprecise temporal expressions in domain ontologies

METADATA MANAGEMENT FOR CLINICAL DATA INTEGRATION

Clinical data have been continuously collected and growing with the wide adoption of electronic health records (EHR). Clinical data have provided the foundation to facilitate state-of-art researches such as artificial intelligence in medicine. At the same time, it has become a challenge to integrate, access, and explore study-level patient data from large volumes of data from heterogeneous databases. Effective, fine-grained, cross-cohort data exploration, and semantically enabled approaches and systems are needed. To build semantically enabled systems, we need to leverage existing terminology systems and ontologies. Numerous ontologies have been developed recently and they play an important role in semantically enabled applications. Because they contain valuable codified knowledge, the management of these ontologies, as metadata, also requires systematic approaches. Moreover, in most clinical settings, patient data are collected with the help of a data dictionary. Knowledge of the relationships between an ontology and a related data dictionary is important for semantic interoperability. Such relationships are represented and maintained by mappings. Mappings store how data source elements and domain ontology concepts are linked, as well as how domain ontology concepts are linked between different ontologies. While mappings are crucial to the maintenance of relationships between an ontology and a related data dictionary, they are commonly captured by CSV files with limits capabilities for sharing, tracking, and visualization. The management of mappings requires an innovative, interactive, and collaborative approach. Metadata management servers to organize data that describes other data. In computer science and information science, ontology is the metadata consisting of the representation, naming, and definition of the hierarchies, properties, and relations between concepts. A structural, scalable, and computer understandable way for metadata management is critical to developing systems with the fine-grained data exploration capabilities. This dissertation presents a systematic approach called MetaSphere using metadata and ontologies to support the management and integration of clinical research data through our ontology-based metadata management system for multiple domains. MetaSphere is a general framework that aims to manage specific domain metadata, provide fine-grained data exploration interface, and store patient data in data warehouses. Moreover, MetaSphere provides a dedicated mapping interface called Interactive Mapping Interface (IMI) to map the data dictionary to well-recognized and standardized ontologies. MetaSphere has been applied to three domains successfully, sleep domain (X-search), pressure ulcer injuries and deep tissue pressure (SCIPUDSphere), and cancer. Specifically, MetaSphere stores domain ontology structurally in databases. Patient data in the corresponding domains are also stored in databases as data warehouses. MetaSphere provides a powerful query interface to enable interaction between human and actual patient data. Query interface is a mechanism allowing researchers to compose complex queries to pinpoint specific cohort over a large amount of patient data. The MetaSphere framework has been instantiated into three domains successfully and the detailed results are as below. X-search is publicly available at https://www.x-search.net with nine sleep domain datasets consisting of over 26,000 unique subjects. The canonical data dictionary contains over 900 common data elements across the datasets. X-search has received over 1800 cross-cohort queries by users from 16 countries. SCIPUDSphere has integrated a total number of 268,562 records containing 282 ICD9 codes related to pressure ulcer injuries among 36,626 individuals with spinal cord injuries. IMI is publicly available at http://epi-tome.com/. Using IMI, we have successfully mapped the North American Association of Central Cancer Registries (NAACCR) data dictionary to the National Cancer Institute Thesaurus (NCIt) concepts

Ubiquitous Semantic Applications

As Semantic Web technology evolves many open areas emerge, which attract more research focus. In addition to quickly expanding Linked Open Data (LOD) cloud, various embeddable metadata formats (e.g. RDFa, microdata) are becoming more common. Corporations are already using existing Web of Data to create new technologies that were not possible before. Watson by IBM an artificial intelligence computer system capable of answering questions posed in natural language can be a great example. On the other hand, ubiquitous devices that have a large number of sensors and integrated devices are becoming increasingly powerful and fully featured computing platforms in our pockets and homes. For many people smartphones and tablet computers have already replaced traditional computers as their window to the Internet and to the Web. Hence, the management and presentation of information that is useful to a user is a main requirement for today’s smartphones. And it is becoming extremely important to provide access to the emerging Web of Data from the ubiquitous devices. In this thesis we investigate how ubiquitous devices can interact with the Semantic Web. We discovered that there are five different approaches for bringing the Semantic Web to ubiquitous devices. We have outlined and discussed in detail existing challenges in implementing this approaches in section 1.2. We have described a conceptual framework for ubiquitous semantic applications in chapter 4. We distinguish three client approaches for accessing semantic data using ubiquitous devices depending on how much of the semantic data processing is performed on the device itself (thin, hybrid and fat clients). These are discussed in chapter 5 along with the solution to every related challenge. Two provider approaches (fat and hybrid) can be distinguished for exposing data from ubiquitous devices on the Semantic Web. These are discussed in chapter 6 along with the solution to every related challenge. We conclude our work with a discussion on each of the contributions of the thesis and propose future work for each of the discussed approach in chapter 7

Un environnement de spécification et de découverte pour la réutilisation des composants logiciels dans le développement des logiciels distribués

Notre travail vise à élaborer une solution efficace pour la découverte et la réutilisation des composants logiciels dans les environnements de développement existants et couramment utilisés. Nous proposons une ontologie pour décrire et découvrir des composants logiciels élémentaires. La description couvre à la fois les propriétés fonctionnelles et les propriétés non fonctionnelles des composants logiciels exprimées comme des paramètres de QoS. Notre processus de recherche est basé sur la fonction qui calcule la distance sémantique entre la signature d'un composant et la signature d'une requête donnée, réalisant ainsi une comparaison judicieuse. Nous employons également la notion de " subsumption " pour comparer l'entrée-sortie de la requête et des composants. Après sélection des composants adéquats, les propriétés non fonctionnelles sont employées comme un facteur distinctif pour raffiner le résultat de publication des composants résultats. Nous proposons une approche de découverte des composants composite si aucun composant élémentaire n'est trouvé, cette approche basée sur l'ontologie commune. Pour intégrer le composant résultat dans le projet en cours de développement, nous avons développé l'ontologie d'intégration et les deux services " input/output convertor " et " output Matching ".Our work aims to develop an effective solution for the discovery and the reuse of software components in existing and commonly used development environments. We propose an ontology for describing and discovering atomic software components. The description covers both the functional and non functional properties which are expressed as QoS parameters. Our search process is based on the function that calculates the semantic distance between the component interface signature and the signature of a given query, thus achieving an appropriate comparison. We also use the notion of "subsumption" to compare the input/output of the query and the components input/output. After selecting the appropriate components, the non-functional properties are used to refine the search result. We propose an approach for discovering composite components if any atomic component is found, this approach based on the shared ontology. To integrate the component results in the project under development, we developed the ontology integration and two services " input/output convertor " and " output Matching "

Linked Open Data - Creating Knowledge Out of Interlinked Data: Results of the LOD2 Project

Database Management; Artificial Intelligence (incl. Robotics); Information Systems and Communication Servic

Social and Semantic Contexts in Tourist Mobile Applications

The ongoing growth of the World Wide Web along with the increase possibility of access information through a variety of devices in mobility, has defi nitely changed the way users acquire, create, and personalize information, pushing innovative strategies for annotating and organizing it. In this scenario, Social Annotation Systems have quickly gained a huge popularity, introducing millions of metadata on di fferent Web resources following a bottom-up approach, generating free and democratic mechanisms of classi cation, namely folksonomies. Moving away from hierarchical classi cation schemas, folksonomies represent also a meaningful mean for identifying similarities among users, resources and tags. At any rate, they suff er from several limitations, such as the lack of specialized tools devoted to manage, modify, customize and visualize them as well as the lack of an explicit semantic, making di fficult for users to bene fit from them eff ectively. Despite appealing promises of Semantic Web technologies, which were intended to explicitly formalize the knowledge within a particular domain in a top-down manner, in order to perform intelligent integration and reasoning on it, they are still far from reach their objectives, due to di fficulties in knowledge acquisition and annotation bottleneck. The main contribution of this dissertation consists in modeling a novel conceptual framework that exploits both social and semantic contextual dimensions, focusing on the domain of tourism and cultural heritage. The primary aim of our assessment is to evaluate the overall user satisfaction and the perceived quality in use thanks to two concrete case studies. Firstly, we concentrate our attention on contextual information and navigation, and on authoring tool; secondly, we provide a semantic mapping of tags of the system folksonomy, contrasted and compared to the expert users' classi cation, allowing a bridge between social and semantic knowledge according to its constantly mutual growth. The performed user evaluations analyses results are promising, reporting a high level of agreement on the perceived quality in use of both the applications and of the speci c analyzed features, demonstrating that a social-semantic contextual model improves the general users' satisfactio