High-Throughput System for the Early Quantification of Major Architectural Traits in Olive Breeding Trials Using UAV Images and OBIA Techniques

The need for the olive farm modernization have encouraged the research of more efficient crop management strategies through cross-breeding programs to release new olive cultivars more suitable for mechanization and use in intensive orchards, with high quality production and resistance to biotic and abiotic stresses. The advancement of breeding programs are hampered by the lack of efficient phenotyping methods to quickly and accurately acquire crop traits such as morphological attributes (tree vigor and vegetative growth habits), which are key to identify desirable genotypes as early as possible. In this context, an UAV-based high-throughput system for olive breeding program applications was developed to extract tree traits in large-scale phenotyping studies under field conditions. The system consisted of UAV-flight configurations, in terms of flight altitude and image overlaps, and a novel, automatic, and accurate object-based image analysis (OBIA) algorithm based on point clouds, which was evaluated in two experimental trials in the framework of a table olive breeding program, with the aim to determine the earliest date for suitable quantifying of tree architectural traits. Two training systems (intensive and hedgerow) were evaluated at two very early stages of tree growth: 15 and 27 months after planting. Digital Terrain Models (DTMs) were automatically and accurately generated by the algorithm as well as every olive tree identified, independently of the training system and tree age. The architectural traits, specially tree height and crown area, were estimated with high accuracy in the second flight campaign, i.e. 27 months after planting. Differences in the quality of 3D crown reconstruction were found for the growth patterns derived from each training system. These key phenotyping traits could be used in several olive breeding programs, as well as to address some agronomical goals. In addition, this system is cost and time optimized, so that requested architectural traits could be provided in the same day as UAV flights. This high-throughput system may solve the actual bottleneck of plant phenotyping of "linking genotype and phenotype," considered a major challenge for crop research in the 21st century, and bring forward the crucial time of decision making for breeders

Continuous Modeling of 3D Building Rooftops From Airborne LIDAR and Imagery

In recent years, a number of mega-cities have provided 3D photorealistic virtual models to support the decisions making process for maintaining the cities' infrastructure and environment more effectively. 3D virtual city models are static snap-shots of the environment and represent the status quo at the time of their data acquisition. However, cities are dynamic system that continuously change over time. Accordingly, their virtual representation need to be regularly updated in a timely manner to allow for accurate analysis and simulated results that decisions are based upon. The concept of "continuous city modeling" is to progressively reconstruct city models by accommodating their changes recognized in spatio-temporal domain, while preserving unchanged structures. However, developing a universal intelligent machine enabling continuous modeling still remains a challenging task. Therefore, this thesis proposes a novel research framework for continuously reconstructing 3D building rooftops using multi-sensor data. For achieving this goal, we first proposes a 3D building rooftop modeling method using airborne LiDAR data. The main focus is on the implementation of an implicit regularization method which impose a data-driven building regularity to noisy boundaries of roof planes for reconstructing 3D building rooftop models. The implicit regularization process is implemented in the framework of Minimum Description Length (MDL) combined with Hypothesize and Test (HAT). Secondly, we propose a context-based geometric hashing method to align newly acquired image data with existing building models. The novelty is the use of context features to achieve robust and accurate matching results. Thirdly, the existing building models are refined by newly proposed sequential fusion method. The main advantage of the proposed method is its ability to progressively refine modeling errors frequently observed in LiDAR-driven building models. The refinement process is conducted in the framework of MDL combined with HAT. Markov Chain Monte Carlo (MDMC) coupled with Simulated Annealing (SA) is employed to perform a global optimization. The results demonstrates that the proposed continuous rooftop modeling methods show a promising aspects to support various critical decisions by not only reconstructing 3D rooftop models accurately, but also by updating the models using multi-sensor data

A Pipeline of 3D Scene Reconstruction from Point Clouds

3D technologies are becoming increasingly popular as their applications in industrial, consumer, entertainment, healthcare, education, and governmental increase in number. According to market predictions, the total 3D modeling and mapping market is expected to grow from $1.1 billion in 2013 to$7.7 billion by 2018. Thus, 3D modeling techniques for different data sources are urgently needed. This thesis addresses techniques for automated point cloud classification and the reconstruction of 3D scenes (including terrain models, 3D buildings and 3D road networks). First, georeferenced binary image processing techniques were developed for various point cloud classifications. Second, robust methods for the pipeline from the original point cloud to 3D model construction were proposed. Third, the reconstruction for the levels of detail (LoDs) of 1-3 (CityGML website) of 3D models was demonstrated. Fourth, different data sources for 3D model reconstruction were studied. The strengths and weaknesses of using the different data sources were addressed. Mobile laser scanning (MLS), unmanned aerial vehicle (UAV) images, airborne laser scanning (ALS), and the Finnish National Land Survey’s open geospatial data sources e.g. a topographic database, were employed as test data. Among these data sources, MLS data from three different systems were explored, and three different densities of ALS point clouds (0.8, 8 and 50 points/m2) were studied. The results were compared with reference data such as an orthophoto with a ground sample distance of 20cm or measured reference points from existing software to evaluate their quality. The results showed that 74.6% of building roofs were reconstructed with the automated process. The resulting building models provided an average height deviation of 15 cm. A total of 6% of model points had a greater than one-pixel deviation from laser points. A total of 2.5% had a deviation of greater than two pixels. The pixel size was determined by the average distance of input laser points. The 3D roads were reconstructed with an average width deviation of 22 cm and an average height deviation of 14 cm. The results demonstrated that 93.4% of building roofs were correctly classified from sparse ALS and that 93.3% of power line points are detected from the six sets of dense ALS data located in forested areas. This study demonstrates the operability of 3D model construction for LoDs of 1-3 via the proposed methodologies and datasets. The study is beneficial to future applications, such as 3D-model-based navigation applications, the updating of 2D topographic databases into 3D maps and rapid, large-area 3D scene reconstruction. 3D-teknologiat ovat tulleet yhä suositummiksi niiden sovellusalojen lisääntyessä teollisuudessa, kuluttajatuotteissa, terveydenhuollossa, koulutuksessa ja hallinnossa. Ennusteiden mukaan 3D-mallinnus- ja -kartoitusmarkkinat kasvavat vuoden 2013 1,1 miljardista dollarista 7,7 miljardiin vuoteen 2018 mennessä. Erilaisia aineistoja käyttäviä 3D-mallinnustekniikoita tarvitaankin yhä enemmän. Tässä väitöskirjatutkimuksessa kehitettiin automaattisen pistepilviaineiston luokittelutekniikoita ja rekonstruoitiin 3D-ympäristöja (maanpintamalleja, rakennuksia ja tieverkkoja). Georeferoitujen binääristen kuvien prosessointitekniikoita kehitettiin useiden pilvipisteaineistojen luokitteluun. Työssä esitetään robusteja menetelmiä alkuperäisestä pistepilvestä 3D-malliin eri CityGML-standardin tarkkuustasoilla. Myös eri aineistolähteitä 3D-mallien rekonstruointiin tutkittiin. Eri aineistolähteiden käytön heikkoudet ja vahvuudet analysoitiin. Testiaineistona käytettiin liikkuvalla keilauksella (mobile laser scanning, MLS) ja ilmakeilauksella (airborne laser scanning, ALS) saatua laserkeilausaineistoja, miehittämättömillä lennokeilla (unmanned aerial vehicle, UAV) otettuja kuvia sekä Maanmittauslaitoksen avoimia aineistoja, kuten maastotietokantaa. Liikkuvalla laserkeilauksella kerätyn aineiston osalta tutkimuksessa käytettiin kolmella eri järjestelmällä saatua dataa, ja kolmen eri tarkkuustason (0,8, 8 ja 50 pistettä/m2) ilmalaserkeilausaineistoa. Tutkimuksessa saatuja tulosten laatua arvioitiin vertaamalla niitä referenssiaineistoon, jona käytettiin ortokuvia (GSD 20cm) ja nykyisissä ohjelmistoissa olevia mitattuja referenssipisteitä. 74,6 % rakennusten katoista saatiin rekonstruoitua automaattisella prosessilla. Rakennusmallien korkeuksien keskipoikkeama oli 15 cm. 6 %:lla mallin pisteistä oli yli yhden pikselin poikkeama laseraineiston pisteisiin verrattuna. 2,5 %:lla oli yli kahden pikselin poikkeama. Pikselikoko määriteltiin kahden laserpisteen välimatkan keskiarvona. Rekonstruoitujen teiden leveyden keskipoikkeama oli 22 cm ja korkeuden keskipoikkeama oli 14 cm. Tulokset osoittavat että 93,4 % rakennuksista saatiin luokiteltua oikein harvasta ilmalaserkeilausaineistosta ja 93,3 % sähköjohdoista saatiin havaittua kuudesta tiheästä metsäalueen ilmalaserkeilausaineistosta. Tutkimus demonstroi 3D-mallin konstruktion toimivuutta tarkkuustasoilla (LoD) 1-3 esitetyillä menetelmillä ja aineistoilla. Tulokset ovat hyödyllisiä kehitettäessä tulevaisuuden sovelluksia, kuten 3D-malleihin perustuvia navigointisovelluksia, topografisten 2D-karttojen ajantasaistamista 3D-kartoiksi, ja nopeaa suurten alueiden 3D-ympäristöjen rekonstruktiota

Effects of Aerial LiDAR Data Density on the Accuracy of Building Reconstruction

Previous work has identified a positive relationship between the density of aerial LiDAR input for building reconstruction and the accuracy of the resulting reconstructed models. We hypothesize a point of diminished returns at which higher data density no longer contributes meaningfully to higher accuracy in the end product. We investigate this relationship by subsampling a high-density dataset from the City of Surrey, BC to different densities and inputting each subsampled dataset to reconstruction using two different reconstruction methods. We then determine the accuracy of reconstruction based on manually created reference data, in terms of both 2D footprint accuracy and 3D model accuracy. We find that there is no quantitative evidence for meaningfully improved output accuracy from densities higher than 4 p/m2 for either method, although aesthetic improvements at higher point cloud densities are noted for one method

Automated 3D scene reconstruction from open geospatial data sources: airborne laser scanning and a 2D topographic database

Open geospatial data sources provide opportunities for low cost 3D scene reconstruction. In this study, based on a sparse airborne laser scanning (ALS) point cloud (0.8 points/m2) obtained from open source databases, a building reconstruction pipeline for CAD building models was developed. The pipeline includes voxel-based roof patch segmentation, extraction of the key-points representing the roof patch outline, step edge identification and adjustment, and CAD building model generation. The advantages of our method lie in generating CAD building models without the step of enforcing the edges to be parallel or building regularization. Furthermore, although it has been challenging to use sparse datasets for 3D building reconstruction, our result demonstrates the great potential in such applications. In this paper, we also investigated the applicability of open geospatial datasets for 3D road detection and reconstruction. Road central lines were acquired from an open source 2D topographic database. ALS data were utilized to obtain the height and width of the road. A constrained search method (CSM) was developed for road width detection. The CSM method was conducted by splitting a given road into patches according to height and direction criteria. The road edges were detected patch by patch. The road width was determined by the average distance from the edge points to the central line. As a result, 3D roads were reconstructed from ALS and a topographic database