Incorporating Expressive Graphical Models in Variational Approximations: Chain-Graphs and Hidden Variables

Global variational approximation methods in graphical models allow efficient approximate inference of complex posterior distributions by using a simpler model. The choice of the approximating model determines a tradeoff between the complexity of the approximation procedure and the quality of the approximation. In this paper, we consider variational approximations based on two classes of models that are richer than standard Bayesian networks, Markov networks or mixture models. As such, these classes allow to find better tradeoffs in the spectrum of approximations. The first class of models are chain graphs, which capture distributions that are partially directed. The second class of models are directed graphs (Bayesian networks) with additional latent variables. Both classes allow representation of multi-variable dependencies that cannot be easily represented within a Bayesian network.Comment: Appears in Proceedings of the Seventeenth Conference on Uncertainty in Artificial Intelligence (UAI2001

On Generalized Bayesian Data Fusion with Complex Models in Large Scale Networks

Recent advances in communications, mobile computing, and artificial intelligence have greatly expanded the application space of intelligent distributed sensor networks. This in turn motivates the development of generalized Bayesian decentralized data fusion (DDF) algorithms for robust and efficient information sharing among autonomous agents using probabilistic belief models. However, DDF is significantly challenging to implement for general real-world applications requiring the use of dynamic/ad hoc network topologies and complex belief models, such as Gaussian mixtures or hybrid Bayesian networks. To tackle these issues, we first discuss some new key mathematical insights about exact DDF and conservative approximations to DDF. These insights are then used to develop novel generalized DDF algorithms for complex beliefs based on mixture pdfs and conditional factors. Numerical examples motivated by multi-robot target search demonstrate that our methods lead to significantly better fusion results, and thus have great potential to enhance distributed intelligent reasoning in sensor networks.Comment: Revised version of paper submitted to 2013 Workshop on Wireless Intelligent Sensor Networks (WISeNET 2013) at Duke University, June 5, 201

When Gaussian Process Meets Big Data: A Review of Scalable GPs

The vast quantity of information brought by big data as well as the evolving computer hardware encourages success stories in the machine learning community. In the meanwhile, it poses challenges for the Gaussian process (GP) regression, a well-known non-parametric and interpretable Bayesian model, which suffers from cubic complexity to data size. To improve the scalability while retaining desirable prediction quality, a variety of scalable GPs have been presented. But they have not yet been comprehensively reviewed and analyzed in order to be well understood by both academia and industry. The review of scalable GPs in the GP community is timely and important due to the explosion of data size. To this end, this paper is devoted to the review on state-of-the-art scalable GPs involving two main categories: global approximations which distillate the entire data and local approximations which divide the data for subspace learning. Particularly, for global approximations, we mainly focus on sparse approximations comprising prior approximations which modify the prior but perform exact inference, posterior approximations which retain exact prior but perform approximate inference, and structured sparse approximations which exploit specific structures in kernel matrix; for local approximations, we highlight the mixture/product of experts that conducts model averaging from multiple local experts to boost predictions. To present a complete review, recent advances for improving the scalability and capability of scalable GPs are reviewed. Finally, the extensions and open issues regarding the implementation of scalable GPs in various scenarios are reviewed and discussed to inspire novel ideas for future research avenues.Comment: 20 pages, 6 figure

Model Selection in Bayesian Neural Networks via Horseshoe Priors

Bayesian Neural Networks (BNNs) have recently received increasing attention for their ability to provide well-calibrated posterior uncertainties. However, model selection---even choosing the number of nodes---remains an open question. In this work, we apply a horseshoe prior over node pre-activations of a Bayesian neural network, which effectively turns off nodes that do not help explain the data. We demonstrate that our prior prevents the BNN from under-fitting even when the number of nodes required is grossly over-estimated. Moreover, this model selection over the number of nodes doesn't come at the expense of predictive or computational performance; in fact, we learn smaller networks with comparable predictive performance to current approaches

Efficient Approximations for the Marginal Likelihood of Incomplete Data Given a Bayesian Network

We discuss Bayesian methods for learning Bayesian networks when data sets are incomplete. In particular, we examine asymptotic approximations for the marginal likelihood of incomplete data given a Bayesian network. We consider the Laplace approximation and the less accurate but more efficient BIC/MDL approximation. We also consider approximations proposed by Draper (1993) and Cheeseman and Stutz (1995). These approximations are as efficient as BIC/MDL, but their accuracy has not been studied in any depth. We compare the accuracy of these approximations under the assumption that the Laplace approximation is the most accurate. In experiments using synthetic data generated from discrete naive-Bayes models having a hidden root node, we find that the CS measure is the most accurate.Comment: Appears in Proceedings of the Twelfth Conference on Uncertainty in Artificial Intelligence (UAI1996

Expectation Propagation for approximate Bayesian inference

This paper presents a new deterministic approximation technique in Bayesian networks. This method, "Expectation Propagation", unifies two previous techniques: assumed-density filtering, an extension of the Kalman filter, and loopy belief propagation, an extension of belief propagation in Bayesian networks. All three algorithms try to recover an approximate distribution which is close in KL divergence to the true distribution. Loopy belief propagation, because it propagates exact belief states, is useful for a limited class of belief networks, such as those which are purely discrete. Expectation Propagation approximates the belief states by only retaining certain expectations, such as mean and variance, and iterates until these expectations are consistent throughout the network. This makes it applicable to hybrid networks with discrete and continuous nodes. Expectation Propagation also extends belief propagation in the opposite direction - it can propagate richer belief states that incorporate correlations between nodes. Experiments with Gaussian mixture models show Expectation Propagation to be convincingly better than methods with similar computational cost: Laplace's method, variational Bayes, and Monte Carlo. Expectation Propagation also provides an efficient algorithm for training Bayes point machine classifiers.Comment: Appears in Proceedings of the Seventeenth Conference on Uncertainty in Artificial Intelligence (UAI2001

Advances in Variational Inference

Many modern unsupervised or semi-supervised machine learning algorithms rely on Bayesian probabilistic models. These models are usually intractable and thus require approximate inference. Variational inference (VI) lets us approximate a high-dimensional Bayesian posterior with a simpler variational distribution by solving an optimization problem. This approach has been successfully used in various models and large-scale applications. In this review, we give an overview of recent trends in variational inference. We first introduce standard mean field variational inference, then review recent advances focusing on the following aspects: (a) scalable VI, which includes stochastic approximations, (b) generic VI, which extends the applicability of VI to a large class of otherwise intractable models, such as non-conjugate models, (c) accurate VI, which includes variational models beyond the mean field approximation or with atypical divergences, and (d) amortized VI, which implements the inference over local latent variables with inference networks. Finally, we provide a summary of promising future research directions

A Bayesian Network Classifier that Combines a Finite Mixture Model and a Naive Bayes Model

In this paper we present a new Bayesian network model for classification that combines the naive-Bayes (NB) classifier and the finite-mixture (FM) classifier. The resulting classifier aims at relaxing the strong assumptions on which the two component models are based, in an attempt to improve on their classification performance, both in terms of accuracy and in terms of calibration of the estimated probabilities. The proposed classifier is obtained by superimposing a finite mixture model on the set of feature variables of a naive Bayes model. We present experimental results that compare the predictive performance on real datasets of the new classifier with the predictive performance of the NB classifier and the FM classifier.Comment: Appears in Proceedings of the Fifteenth Conference on Uncertainty in Artificial Intelligence (UAI1999

Approximate Inference with Amortised MCMC

We propose a novel approximate inference algorithm that approximates a target distribution by amortising the dynamics of a user-selected MCMC sampler. The idea is to initialise MCMC using samples from an approximation network, apply the MCMC operator to improve these samples, and finally use the samples to update the approximation network thereby improving its quality. This provides a new generic framework for approximate inference, allowing us to deploy highly complex, or implicitly defined approximation families with intractable densities, including approximations produced by warping a source of randomness through a deep neural network. Experiments consider image modelling with deep generative models as a challenging test for the method. Deep models trained using amortised MCMC are shown to generate realistic looking samples as well as producing diverse imputations for images with regions of missing pixels

Discretely Relaxing Continuous Variables for tractable Variational Inference

We explore a new research direction in Bayesian variational inference with discrete latent variable priors where we exploit Kronecker matrix algebra for efficient and exact computations of the evidence lower bound (ELBO). The proposed "DIRECT" approach has several advantages over its predecessors; (i) it can exactly compute ELBO gradients (i.e. unbiased, zero-variance gradient estimates), eliminating the need for high-variance stochastic gradient estimators and enabling the use of quasi-Newton optimization methods; (ii) its training complexity is independent of the number of training points, permitting inference on large datasets; and (iii) its posterior samples consist of sparse and low-precision quantized integers which permit fast inference on hardware limited devices. In addition, our DIRECT models can exactly compute statistical moments of the parameterized predictive posterior without relying on Monte Carlo sampling. The DIRECT approach is not practical for all likelihoods, however, we identify a popular model structure which is practical, and demonstrate accurate inference using latent variables discretized as extremely low-precision 4-bit quantized integers. While the ELBO computations considered in the numerical studies require over $10^{2352}$ log-likelihood evaluations, we train on datasets with over two-million points in just seconds.Comment: Appears in the proceedings of the Advances in Neural Information Processing Systems (NeurIPS), 2018. Full code is available at https://github.com/treforevans/direc