Improved Accuracy and Parallelism for MRRR-based Eigensolvers -- A Mixed Precision Approach

The real symmetric tridiagonal eigenproblem is of outstanding importance in numerical computations; it arises frequently as part of eigensolvers for standard and generalized dense Hermitian eigenproblems that are based on a reduction to tridiagonal form. For its solution, the algorithm of Multiple Relatively Robust Representations (MRRR) is among the fastest methods. Although fast, the solvers based on MRRR do not deliver the same accuracy as competing methods like Divide & Conquer or the QR algorithm. In this paper, we demonstrate that the use of mixed precisions leads to improved accuracy of MRRR-based eigensolvers with limited or no performance penalty. As a result, we obtain eigensolvers that are not only equally or more accurate than the best available methods, but also -in most circumstances- faster and more scalable than the competition

Statistical Model Checking : An Overview

Quantitative properties of stochastic systems are usually specified in logics that allow one to compare the measure of executions satisfying certain temporal properties with thresholds. The model checking problem for stochastic systems with respect to such logics is typically solved by a numerical approach that iteratively computes (or approximates) the exact measure of paths satisfying relevant subformulas; the algorithms themselves depend on the class of systems being analyzed as well as the logic used for specifying the properties. Another approach to solve the model checking problem is to \emph{simulate} the system for finitely many runs, and use \emph{hypothesis testing} to infer whether the samples provide a \emph{statistical} evidence for the satisfaction or violation of the specification. In this short paper, we survey the statistical approach, and outline its main advantages in terms of efficiency, uniformity, and simplicity.Comment: non

A WOA-based optimization approach for task scheduling in cloud Computing systems

Task scheduling in cloud computing can directly affect the resource usage and operational cost of a system. To improve the efficiency of task executions in a cloud, various metaheuristic algorithms, as well as their variations, have been proposed to optimize the scheduling. In this work, for the first time, we apply the latest metaheuristics WOA (the whale optimization algorithm) for cloud task scheduling with a multiobjective optimization model, aiming at improving the performance of a cloud system with given computing resources. On that basis, we propose an advanced approach called IWC (Improved WOA for Cloud task scheduling) to further improve the optimal solution search capability of the WOA-based method. We present the detailed implementation of IWC and our simulation-based experiments show that the proposed IWC has better convergence speed and accuracy in searching for the optimal task scheduling plans, compared to the current metaheuristic algorithms. Moreover, it can also achieve better performance on system resource utilization, in the presence of both small and large-scale tasks

Overview of Parallel Platforms for Common High Performance Computing

The paper deals with various parallel platforms used for high performance computing in the signal processing domain. More precisely, the methods exploiting the multicores central processing units such as message passing interface and OpenMP are taken into account. The properties of the programming methods are experimentally proved in the application of a fast Fourier transform and a discrete cosine transform and they are compared with the possibilities of MATLAB's built-in functions and Texas Instruments digital signal processors with very long instruction word architectures. New FFT and DCT implementations were proposed and tested. The implementation phase was compared with CPU based computing methods and with possibilities of the Texas Instruments digital signal processing library on C6747 floating-point DSPs. The optimal combination of computing methods in the signal processing domain and new, fast routines' implementation is proposed as well

BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments

Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require high-performance computing (HPC) techniques and can benefit from specialized technologies such as Scientific Workflow Management Systems (SWfMS) and databases. In this work, we present BioWorkbench, a framework for managing and analyzing bioinformatics experiments. This framework automatically collects provenance data, including both performance data from workflow execution and data from the scientific domain of the workflow application. Provenance data can be analyzed through a web application that abstracts a set of queries to the provenance database, simplifying access to provenance information. We evaluate BioWorkbench using three case studies: SwiftPhylo, a phylogenetic tree assembly workflow; SwiftGECKO, a comparative genomics workflow; and RASflow, a RASopathy analysis workflow. We analyze each workflow from both computational and scientific domain perspectives, by using queries to a provenance and annotation database. Some of these queries are available as a pre-built feature of the BioWorkbench web application. Through the provenance data, we show that the framework is scalable and achieves high-performance, reducing up to 98% of the case studies execution time. We also show how the application of machine learning techniques can enrich the analysis process

VirtFogSim: A parallel toolbox for dynamic energy-delay performance testing and optimization of 5G Mobile-Fog-Cloud virtualized platforms

It is expected that the pervasive deployment of multi-tier 5G-supported Mobile-Fog-Cloudtechnological computing platforms will constitute an effective means to support the real-time execution of future Internet applications by resource- and energy-limited mobile devices. Increasing interest in this emerging networking-computing technology demands the optimization and performance evaluation of several parts of the underlying infrastructures. However, field trials are challenging due to their operational costs, and in every case, the obtained results could be difficult to repeat and customize. These emergingMobile-Fog-Cloud ecosystems still lack, indeed, customizable software tools for the performance simulation of their computing-networking building blocks. Motivated by these considerations, in this contribution, we present VirtFogSim. It is aMATLAB-supported software toolbox that allows the dynamic joint optimization and tracking of the energy and delay performance of Mobile-Fog-Cloud systems for the execution of applications described by general Directed Application Graphs (DAGs). In a nutshell, the main peculiar features of the proposed VirtFogSim toolbox are that: (i) it allows the joint dynamic energy-aware optimization of the placement of the application tasks and the allocation of the needed computing-networking resources under hard constraints on acceptable overall execution times, (ii) it allows the repeatable and customizable simulation of the resulting energy-delay performance of the overall system; (iii) it allows the dynamic tracking of the performed resource allocation under time-varying operational environments, as those typically featuring mobile applications; (iv) it is equipped with a user-friendly Graphic User Interface (GUI) that supports a number of graphic formats for data rendering, and (v) itsMATLAB code is optimized for running atop multi-core parallel execution platforms. To check both the actual optimization and scalability capabilities of the VirtFogSim toolbox, a number of experimental setups featuring different use cases and operational environments are simulated, and their performances are compared