Mining Patterns in Networks using Homomorphism

In recent years many algorithms have been developed for finding patterns in graphs and networks. A disadvantage of these algorithms is that they use subgraph isomorphism to determine the support of a graph pattern; subgraph isomorphism is a well-known NP complete problem. In this paper, we propose an alternative approach which mines tree patterns in networks by using subgraph homomorphism. The advantage of homomorphism is that it can be computed in polynomial time, which allows us to develop an algorithm that mines tree patterns in arbitrary graphs in incremental polynomial time. Homomorphism however entails two problems not found when using isomorphism: (1) two patterns of different size can be equivalent; (2) patterns of unbounded size can be frequent. In this paper we formalize these problems and study solutions that easily fit within our algorithm

Counting Subgraphs in Somewhere Dense Graphs

We study the problems of counting copies and induced copies of a small pattern graph $H$ in a large host graph $G$. Recent work fully classified the complexity of those problems according to structural restrictions on the patterns $H$. In this work, we address the more challenging task of analysing the complexity for restricted patterns and restricted hosts. Specifically we ask which families of allowed patterns and hosts imply fixed-parameter tractability, i.e., the existence of an algorithm running in time $f(H)\cdot |G|^{O(1)}$ for some computable function $f$. Our main results present exhaustive and explicit complexity classifications for families that satisfy natural closure properties. Among others, we identify the problems of counting small matchings and independent sets in subgraph-closed graph classes $\mathcal{G}$ as our central objects of study and establish the following crisp dichotomies as consequences of the Exponential Time Hypothesis: (1) Counting $k$-matchings in a graph $G\in\mathcal{G}$ is fixed-parameter tractable if and only if $\mathcal{G}$ is nowhere dense. (2) Counting $k$-independent sets in a graph $G\in\mathcal{G}$ is fixed-parameter tractable if and only if $\mathcal{G}$ is nowhere dense. Moreover, we obtain almost tight conditional lower bounds if $\mathcal{G}$ is somewhere dense, i.e., not nowhere dense. These base cases of our classifications subsume a wide variety of previous results on the matching and independent set problem, such as counting $k$-matchings in bipartite graphs (Curticapean, Marx; FOCS 14), in $F$-colourable graphs (Roth, Wellnitz; SODA 20), and in degenerate graphs (Bressan, Roth; FOCS 21), as well as counting $k$-independent sets in bipartite graphs (Curticapean et al.; Algorithmica 19).Comment: 35 pages, 3 figures, 4 tables, abstract shortened due to ArXiv requirement