Subset sum problems with digraph constraints

We introduce and study optimization problems which are related to the well-known Subset Sum problem. In each new problem, a node-weighted digraph is given and one has to select a subset of vertices whose total weight does not exceed a given budget. Some additional constraints called digraph constraints and maximality need to be satisfied. The digraph constraint imposes that a node must belong to the solution if at least one of its predecessors is in the solution. An alternative of this constraint says that a node must belong to the solution if all its predecessors are in the solution. The maximality constraint ensures that no superset of a feasible solution is also feasible. The combination of these constraints provides four problems. We study their complexity and present some approximation results according to the type of input digraph, such as directed acyclic graphs and oriented trees

Universal Sequencing on an Unreliable Machine

We consider scheduling on an unreliable machine that may experience unexpected changes in processing speed or even full breakdowns. Our objective is to minimize ∑ wjf(Cj) for any nondecreasing, nonnegative, differentiable cost function f(Cj). We aim for a universal solution that performs well without adaptation for all cost functions for any possible machine behavior. We design a deterministic algorithm that finds a universal scheduling sequence with a solution value within 4 times the value of an optimal clairvoyant algorithm that knows the machine behavior in advance. A randomized version of this algorithm attains in expectation a ratio of e. We also show that both performance guarantees are best possible for any unbounded cost function. Our algorithms can be adapted to run in polynomial time with slightly increased cost. When jobs have individual release dates, the situation changes drastically. Even if all weights are equal, there are instances for which any universal solution is a factor of Ω(log n / log log n) worse than an optimal sequence for any unbounded cost function. Motivated by this hardness, we study the special case when the processing time of each job is proportional to its weight. We present a nontrivial algorithm with a small constant performance guarantee

Minimum multicolored subgraph problem in multiplex pcr primer set selection and population haplotyping

Abstract. In this paper we consider the minimum weight multicolored subgraph problem (MWMCSP), which is a common generalization of minimum cost multiplex PCR primer set selection and maximum likelihood population haplotyping. In this problem one is given an undirected graph G with non-negative vertex weights and a color function that assigns to each edge one or more of n given colors, and the goal is to find a minimum weight set of vertices inducing edges of all n colors. We obtain improved approximation algorithms and hardness results for MWMCSP and its variant in which the goal is to find a minimum number of vertices inducing edges of at least k colors for a given integer k ≤ n.