42,832 research outputs found
Easy identification of generalized common and conserved nested intervals
In this paper we explain how to easily compute gene clusters, formalized by
classical or generalized nested common or conserved intervals, between a set of
K genomes represented as K permutations. A b-nested common (resp. conserved)
interval I of size |I| is either an interval of size 1 or a common (resp.
conserved) interval that contains another b-nested common (resp. conserved)
interval of size at least |I|-b. When b=1, this corresponds to the classical
notion of nested interval. We exhibit two simple algorithms to output all
b-nested common or conserved intervals between K permutations in O(Kn+nocc)
time, where nocc is the total number of such intervals. We also explain how to
count all b-nested intervals in O(Kn) time. New properties of the family of
conserved intervals are proposed to do so
Eliciting a predatory response in the eastern corn snake (Pantherophis guttatus) using live and inanimate sensory stimuli: implications for managing invasive populations
North America's Eastern corn snake (Pantherophis guttatus) has been introduced to several islands throughout the Caribbean and Australasia where it poses a significant threat to native wildlife. Invasive snake control programs often involve trapping with live bait, a practice that, as well as being costly and labour intensive, raises welfare and ethical concerns. This study assessed corn snake response to live and inanimate sensory stimuli in an attempt to inform possible future trapping of the species and the development of alternative trap lures. We exposed nine individuals to sensory cues in the form of odour, visual, vibration and combined stimuli and measured the response (rate of tongue-flick [RTF]). RTF was significantly higher in odour and combined cues treatments, and there was no significant difference in RTF between live and inanimate cues during odour treatments. Our findings suggest chemical cues are of primary importance in initiating predation and that an inanimate odour stimulus, absent of simultaneous visual and vibratory cues, is a potential low-cost alternative trap lure for the control of invasive corn snake populations
Synthetic Turing protocells: vesicle self-reproduction through symmetry-breaking instabilities
The reproduction of a living cell requires a repeatable set of chemical
events to be properly coordinated. Such events define a replication cycle,
coupling the growth and shape change of the cell membrane with internal
metabolic reactions. Although the logic of such process is determined by
potentially simple physico-chemical laws, the modeling of a full,
self-maintained cell cycle is not trivial. Here we present a novel approach to
the problem which makes use of so called symmetry breaking instabilities as the
engine of cell growth and division. It is shown that the process occurs as a
consequence of the breaking of spatial symmetry and provides a reliable
mechanism of vesicle growth and reproduction. Our model opens the possibility
of a synthetic protocell lacking information but displaying self-reproduction
under a very simple set of chemical reactions
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Towards an aspect weaving BPEL engine
This position paper proposes the use of dynamic aspects and
the visitor design pattern to obtain a highly configurable and
extensible BPEL engine. Using these two techniques, the
core of this infrastructural software can be customised to
meet new requirements and add features such as debugging,
execution monitoring, or changing to another Web Service
selection policy. Additionally, it can easily be extended to
cope with customer-specific BPEL extensions. We propose
the use of dynamic aspects not only on the engine itself
but also on the workflow in order to tackle the problems of
Web Service hot deployment and hot fixes to long running
processes. In this way, composing aWeb Service "on-the-fly"
means weaving its choreography interface into the workflow
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