Aplicação de técnicas de Clustering ao contexto da Tomada de Decisão em Grupo

Nowadays, decisions made by executives and managers are primarily made in a group. Therefore, group decision-making is a process where a group of people called participants work together to analyze a set of variables, considering and evaluating a set of alternatives to select one or more solutions. There are many problems associated with group decision-making, namely when the participants cannot meet for any reason, ranging from schedule incompatibility to being in different countries with different time zones. To support this process, Group Decision Support Systems (GDSS) evolved to what today we call web-based GDSS. In GDSS, argumentation is ideal since it makes it easier to use justifications and explanations in interactions between decision-makers so they can sustain their opinions. Aspect Based Sentiment Analysis (ABSA) is a subfield of Argument Mining closely related to Natural Language Processing. It intends to classify opinions at the aspect level and identify the elements of an opinion. Applying ABSA techniques to Group Decision Making Context results in the automatic identification of alternatives and criteria, for example. This automatic identification is essential to reduce the time decision-makers take to step themselves up on Group Decision Support Systems and offer them various insights and knowledge on the discussion they are participants. One of these insights can be arguments getting used by the decision-makers about an alternative. Therefore, this dissertation proposes a methodology that uses an unsupervised technique, Clustering, and aims to segment the participants of a discussion based on arguments used so it can produce knowledge from the current information in the GDSS. This methodology can be hosted in a web service that follows a micro-service architecture and utilizes Data Preprocessing and Intra-sentence Segmentation in addition to Clustering to achieve the objectives of the dissertation. Word Embedding is needed when we apply clustering techniques to natural language text to transform the natural language text into vectors usable by the clustering techniques. In addition to Word Embedding, Dimensionality Reduction techniques were tested to improve the results. Maintaining the same Preprocessing steps and varying the chosen Clustering techniques, Word Embedders, and Dimensionality Reduction techniques came up with the best approach. This approach consisted of the KMeans++ clustering technique, using SBERT as the word embedder with UMAP dimensionality reduction, reducing the number of dimensions to 2. This experiment achieved a Silhouette Score of 0.63 with 8 clusters on the baseball dataset, which wielded good cluster results based on their manual review and Wordclouds. The same approach obtained a Silhouette Score of 0.59 with 16 clusters on the car brand dataset, which we used as an approach validation dataset.Atualmente, as decisões tomadas por gestores e executivos são maioritariamente realizadas em grupo. Sendo assim, a tomada de decisão em grupo é um processo no qual um grupo de pessoas denominadas de participantes, atuam em conjunto, analisando um conjunto de variáveis, considerando e avaliando um conjunto de alternativas com o objetivo de selecionar uma ou mais soluções. Existem muitos problemas associados ao processo de tomada de decisão, principalmente quando os participantes não têm possibilidades de se reunirem (Exs.: Os participantes encontramse em diferentes locais, os países onde estão têm fusos horários diferentes, incompatibilidades de agenda, etc.). Para suportar este processo de tomada de decisão, os Sistemas de Apoio à Tomada de Decisão em Grupo (SADG) evoluíram para o que hoje se chamam de Sistemas de Apoio à Tomada de Decisão em Grupo baseados na Web. Num SADG, argumentação é ideal pois facilita a utilização de justificações e explicações nas interações entre decisores para que possam suster as suas opiniões. Aspect Based Sentiment Analysis (ABSA) é uma área de Argument Mining correlacionada com o Processamento de Linguagem Natural. Esta área pretende classificar opiniões ao nível do aspeto da frase e identificar os elementos de uma opinião. Aplicando técnicas de ABSA à Tomada de Decisão em Grupo resulta na identificação automática de alternativas e critérios por exemplo. Esta identificação automática é essencial para reduzir o tempo que os decisores gastam a customizarem-se no SADG e oferece aos mesmos conhecimento e entendimentos sobre a discussão ao qual participam. Um destes entendimentos pode ser os argumentos a serem usados pelos decisores sobre uma alternativa. Assim, esta dissertação propõe uma metodologia que utiliza uma técnica não-supervisionada, Clustering, com o objetivo de segmentar os participantes de uma discussão com base nos argumentos usados pelos mesmos de modo a produzir conhecimento com a informação atual no SADG. Esta metodologia pode ser colocada num serviço web que segue a arquitetura micro serviços e utiliza Preprocessamento de Dados e Segmentação Intra Frase em conjunto com o Clustering para atingir os objetivos desta dissertação. Word Embedding também é necessário para aplicar técnicas de Clustering a texto em linguagem natural para transformar o texto em vetores que possam ser usados pelas técnicas de Clustering. Também Técnicas de Redução de Dimensionalidade também foram testadas de modo a melhorar os resultados. Mantendo os passos de Preprocessamento e variando as técnicas de Clustering, Word Embedder e as técnicas de Redução de Dimensionalidade de modo a encontrar a melhor abordagem. Essa abordagem consiste na utilização da técnica de Clustering KMeans++ com o SBERT como Word Embedder e UMAP como a técnica de redução de dimensionalidade, reduzindo as dimensões iniciais para duas. Esta experiência obteve um Silhouette Score de 0.63 com 8 clusters no dataset de baseball, que resultou em bons resultados de cluster com base na sua revisão manual e visualização dos WordClouds. A mesma abordagem obteve um Silhouette Score de 0.59 com 16 clusters no dataset das marcas de carros, ao qual usamos esse dataset com validação de abordagem

Recent Trends in Computational Intelligence

Traditional models struggle to cope with complexity, noise, and the existence of a changing environment, while Computational Intelligence (CI) offers solutions to complicated problems as well as reverse problems. The main feature of CI is adaptability, spanning the fields of machine learning and computational neuroscience. CI also comprises biologically-inspired technologies such as the intellect of swarm as part of evolutionary computation and encompassing wider areas such as image processing, data collection, and natural language processing. This book aims to discuss the usage of CI for optimal solving of various applications proving its wide reach and relevance. Bounding of optimization methods and data mining strategies make a strong and reliable prediction tool for handling real-life applications

A perceptual learning model to discover the hierarchical latent structure of image collections

Biology has been an unparalleled source of inspiration for the work of researchers in several scientific and engineering fields including computer vision. The starting point of this thesis is the neurophysiological properties of the human early visual system, in particular, the cortical mechanism that mediates learning by exploiting information about stimuli repetition. Repetition has long been considered a fundamental correlate of skill acquisition andmemory formation in biological aswell as computational learning models. However, recent studies have shown that biological neural networks have differentways of exploiting repetition in forming memory maps. The thesis focuses on a perceptual learning mechanism called repetition suppression, which exploits the temporal distribution of neural activations to drive an efficient neural allocation for a set of stimuli. This explores the neurophysiological hypothesis that repetition suppression serves as an unsupervised perceptual learning mechanism that can drive efficient memory formation by reducing the overall size of stimuli representation while strengthening the responses of the most selective neurons. This interpretation of repetition is different from its traditional role in computational learning models mainly to induce convergence and reach training stability, without using this information to provide focus for the neural representations of the data. The first part of the thesis introduces a novel computational model with repetition suppression, which forms an unsupervised competitive systemtermed CoRe, for Competitive Repetition-suppression learning. The model is applied to generalproblems in the fields of computational intelligence and machine learning. Particular emphasis is placed on validating the model as an effective tool for the unsupervised exploration of bio-medical data. In particular, it is shown that the repetition suppression mechanism efficiently addresses the issues of automatically estimating the number of clusters within the data, as well as filtering noise and irrelevant input components in highly dimensional data, e.g. gene expression levels from DNA Microarrays. The CoRe model produces relevance estimates for the each covariate which is useful, for instance, to discover the best discriminating bio-markers. The description of the model includes a theoretical analysis using Huber’s robust statistics to show that the model is robust to outliers and noise in the data. The convergence properties of themodel also studied. It is shown that, besides its biological underpinning, the CoRe model has useful properties in terms of asymptotic behavior. By exploiting a kernel-based formulation for the CoRe learning error, a theoretically sound motivation is provided for the model’s ability to avoid local minima of its loss function. To do this a necessary and sufficient condition for global error minimization in vector quantization is generalized by extending it to distance metrics in generic Hilbert spaces. This leads to the derivation of a family of kernel-based algorithms that address the local minima issue of unsupervised vector quantization in a principled way. The experimental results show that the algorithm can achieve a consistent performance gain compared with state-of-the-art learning vector quantizers, while retaining a lower computational complexity (linear with respect to the dataset size). Bridging the gap between the low level representation of the visual content and the underlying high-level semantics is a major research issue of current interest. The second part of the thesis focuses on this problem by introducing a hierarchical and multi-resolution approach to visual content understanding. On a spatial level, CoRe learning is used to pool together the local visual patches by organizing them into perceptually meaningful intermediate structures. On the semantical level, it provides an extension of the probabilistic Latent Semantic Analysis (pLSA) model that allows discovery and organization of the visual topics into a hierarchy of aspects. The proposed hierarchical pLSA model is shown to effectively address the unsupervised discovery of relevant visual classes from pictorial collections, at the same time learning to segment the image regions containing the discovered classes. Furthermore, by drawing on a recent pLSA-based image annotation system, the hierarchical pLSA model is extended to process and representmulti-modal collections comprising textual and visual data. The results of the experimental evaluation show that the proposed model learns to attach textual labels (available only at the level of the whole image) to the discovered image regions, while increasing the precision/ recall performance with respect to flat, pLSA annotation model

Unsupervised learning of relation detection patterns

L'extracció d'informació és l'àrea del processament de llenguatge natural l'objectiu de la qual és l'obtenir dades estructurades a partir de la informació rellevant continguda en fragments textuals. L'extracció d'informació requereix una quantitat considerable de coneixement lingüístic. La especificitat d'aquest coneixement suposa un inconvenient de cara a la portabilitat dels sistemes, ja que un canvi d'idioma, domini o estil té un cost en termes d'esforç humà. Durant dècades, s'han aplicat tècniques d'aprenentatge automàtic per tal de superar aquest coll d'ampolla de portabilitat, reduint progressivament la supervisió humana involucrada. Tanmateix, a mida que augmenta la disponibilitat de grans col·leccions de documents, esdevenen necessàries aproximacions completament nosupervisades per tal d'explotar el coneixement que hi ha en elles. La proposta d'aquesta tesi és la d'incorporar tècniques de clustering a l'adquisició de patrons per a extracció d'informació, per tal de reduir encara més els elements de supervisió involucrats en el procés En particular, el treball se centra en el problema de la detecció de relacions. L'assoliment d'aquest objectiu final ha requerit, en primer lloc, el considerar les diferents estratègies en què aquesta combinació es podia dur a terme; en segon lloc, el desenvolupar o adaptar algorismes de clustering adequats a les nostres necessitats; i en tercer lloc, el disseny de procediments d'adquisició de patrons que incorporessin la informació de clustering. Al final d'aquesta tesi, havíem estat capaços de desenvolupar i implementar una aproximació per a l'aprenentatge de patrons per a detecció de relacions que, utilitzant tècniques de clustering i un mínim de supervisió humana, és competitiu i fins i tot supera altres aproximacions comparables en l'estat de l'art.Information extraction is the natural language processing area whose goal is to obtain structured data from the relevant information contained in textual fragments. Information extraction requires a significant amount of linguistic knowledge. The specificity of such knowledge supposes a drawback on the portability of the systems, as a change of language, domain or style demands a costly human effort. Machine learning techniques have been applied for decades so as to overcome this portability bottleneck¿progressively reducing the amount of involved human supervision. However, as the availability of large document collections increases, completely unsupervised approaches become necessary in order to mine the knowledge contained in them. The proposal of this thesis is to incorporate clustering techniques into pattern learning for information extraction, in order to further reduce the elements of supervision involved in the process. In particular, the work focuses on the problem of relation detection. The achievement of this ultimate goal has required, first, considering the different strategies in which this combination could be carried out; second, developing or adapting clustering algorithms suitable to our needs; and third, devising pattern learning procedures which incorporated clustering information. By the end of this thesis, we had been able to develop and implement an approach for learning of relation detection patterns which, using clustering techniques and minimal human supervision, is competitive and even outperforms other comparable approaches in the state of the art.Postprint (published version

Argumentation dialogues in web-based GDSS: an approach using machine learning techniques

Tese de doutoramento em InformaticsA tomada de decisão está presente no dia a dia de qualquer pessoa, mesmo que muitas vezes ela não tenha consciência disso. As decisões podem estar relacionadas com problemas quotidianos, ou podem estar relacionadas com questões mais complexas, como é o caso das questões organizacionais. Normalmente, no contexto organizacional, as decisões são tomadas em grupo. Os Sistemas de Apoio à Decisão em Grupo têm sido estudados ao longo das últimas décadas com o objetivo de melhorar o apoio prestado aos decisores nas mais diversas situações e/ou problemas a resolver. Existem duas abordagens principais à implementação de Sistemas de Apoio à Decisão em Grupo: a abordagem clássica, baseada na agregação matemática das preferências dos diferentes elementos do grupo e as abordagens baseadas na negociação automática (e.g. Teoria dos Jogos, Argumentação, entre outras). Os atuais Sistemas de Apoio à Decisão em Grupo baseados em argumentação podem gerar uma enorme quantidade de dados. O objetivo deste trabalho de investigação é estudar e desenvolver modelos utilizando técnicas de aprendizagem automática para extrair conhecimento dos diálogos argumentativos realizados pelos decisores, mais concretamente, pretende-se criar modelos para analisar, classificar e processar esses dados, potencializando a geração de novo conhecimento que será utilizado tanto por agentes inteligentes, como por decisiores reais. Promovendo desta forma a obtenção de consenso entre os membros do grupo. Com base no estudo da literatura e nos desafios em aberto neste domínio, formulou-se a seguinte hipótese de investigação - É possível usar técnicas de aprendizagem automática para apoiar diálogos argumentativos em Sistemas de Apoio à Decisão em Grupo baseados na web. No âmbito dos trabalhos desenvolvidos, foram aplicados algoritmos de classificação supervisionados a um conjunto de dados contendo argumentos extraídos de debates online, criando um classificador de frases argumentativas que pode classificar automaticamente (A favor/Contra) frases argumentativas trocadas no contexto da tomada de decisão. Foi desenvolvido um modelo de clustering dinâmico para organizar as conversas com base nos argumentos utilizados. Além disso, foi proposto um Sistema de Apoio à Decisão em Grupo baseado na web que possibilita apoiar grupos de decisores independentemente de sua localização geográfica. O sistema permite a criação de problemas multicritério e a configuração das preferências, intenções e interesses de cada decisor. Este sistema de apoio à decisão baseado na web inclui os dashboards de relatórios inteligentes que são gerados através dos resultados dos trabalhos alcançados pelos modelos anteriores já referidos. A concretização de cada um dos objetivos permitiu validar as questões de investigação identificadas e assim responder positivamente à hipótese definida.Decision-making is present in anyone’s daily life, even if they are often unaware of it. Decisions can be related to everyday problems, or they can be related to more complex issues, such as organizational issues. Normally, in the organizational context, decisions are made in groups. Group Decision Support Systems have been studied over the past decades with the aim of improving the support provided to decision-makers in the most diverse situations and/or problems to be solved. There are two main approaches to implementing Group Decision Support Systems: the classical approach, based on the mathematical aggregation of the preferences of the different elements of the group, and the approaches based on automatic negotiation (e.g. Game Theory, Argumentation, among others). Current argumentation-based Group Decision Support Systems can generate an enormous amount of data. The objective of this research work is to study and develop models using automatic learning techniques to extract knowledge from argumentative dialogues carried out by decision-makers, more specifically, it is intended to create models to analyze, classify and process these data, enhancing the generation of new knowledge that will be used both by intelligent agents and by real decision-makers. Promoting in this way the achievement of consensus among the members of the group. Based on the literature study and the open challenges in this domain, the following research hypothesis was formulated - It is possible to use machine learning techniques to support argumentative dialogues in web-based Group Decision Support Systems. As part of the work developed, supervised classification algorithms were applied to a data set containing arguments extracted from online debates, creating an argumentative sentence classifier that can automatically classify (For/Against) argumentative sentences exchanged in the context of decision-making. A dynamic clustering model was developed to organize conversations based on the arguments used. In addition, a web-based Group Decision Support System was proposed that makes it possible to support groups of decision-makers regardless of their geographic location. The system allows the creation of multicriteria problems and the configuration of preferences, intentions, and interests of each decision-maker. This web-based decision support system includes dashboards of intelligent reports that are generated through the results of the work achieved by the previous models already mentioned. The achievement of each objective allowed validation of the identified research questions and thus responded positively to the defined hypothesis.I also thank to Fundação para a Ciência e a Tecnologia, for the Ph.D. grant funding with the reference: SFRH/BD/137150/2018

Systems Analytics and Integration of Big Omics Data

A “genotype"" is essentially an organism's full hereditary information which is obtained from its parents. A ""phenotype"" is an organism's actual observed physical and behavioral properties. These may include traits such as morphology, size, height, eye color, metabolism, etc. One of the pressing challenges in computational and systems biology is genotype-to-phenotype prediction. This is challenging given the amount of data generated by modern Omics technologies. This “Big Data” is so large and complex that traditional data processing applications are not up to the task. Challenges arise in collection, analysis, mining, sharing, transfer, visualization, archiving, and integration of these data. In this Special Issue, there is a focus on the systems-level analysis of Omics data, recent developments in gene ontology annotation, and advances in biological pathways and network biology. The integration of Omics data with clinical and biomedical data using machine learning is explored. This Special Issue covers new methodologies in the context of gene–environment interactions, tissue-specific gene expression, and how external factors or host genetics impact the microbiome

Bioinformatics

This book is divided into different research areas relevant in Bioinformatics such as biological networks, next generation sequencing, high performance computing, molecular modeling, structural bioinformatics, molecular modeling and intelligent data analysis. Each book section introduces the basic concepts and then explains its application to problems of great relevance, so both novice and expert readers can benefit from the information and research works presented here