Managing Overheads in Asynchronous Many-Task Runtime Systems

Asynchronous Many-Task (AMT) runtime systems are based on the idea of dividing an algorithm into small units of work, known as tasks. The runtime system is then responsible for scheduling and executing these tasks in an efficient manner by taking into account the resources provided to it and the associated data dependencies between the tasks. One of the primary challenges faced by AMTs is managing such fine-grained parallelism and the overheads associated with creating, scheduling and executing tasks. This work develops methodologies for assessing and managing overheads associated with fine-grained task execution in HPX, our exemplar Asynchronous Many-Task runtime system. Known optimization techniques, viz. active message coalescing, task inlining and parallel loop iteration chunking are applied to HPX. Active message coalescing, where messages bound to the same destination are aggregated into a single message, is presented as a solution to minimize overheads associated with fine-grained communications. Methodologies and metrics for analyzing fine-grained communication overheads are developed. The metrics identified and implemented in this research aid in evaluating network efficiency by giving us an intrinsic view of the underlying network overhead that would be difficult to measure using conventional methods. Task inlining, a method that allows runtime systems to manage the overheads introduced by a large number of tasks by merging tasks together into one thread of execution, is presented as a technique for minimizing fine-grained task overheads. A runtime policy that dynamically decides whether to inline a task is developed and evaluated on different processor architectures. A methodology to derive a largely machine independent constant that allows controlling task granularity is developed. Finally, the machine independent constant derived in the context of task inlining is applied to chunking of parallel loop iterations, which confirms its applicability to reduce overheads, in the context of finding the optimal chunk size of the combined loop iterations

Quantum Criticality in Strongly Correlated Electron Systems

The study of the Hubbard model in three dimensions contains a variety of phases dependent upon the chosen parameters. This thesis shows that there is the indication of a zero temperature phase transition at a finite doping. The Hubbard model has been used to identify a similar quantum critical point in two dimensions. The presented results continue these investigations. The system demonstrates a strange metal phase at finite temperature which cannot be described in term of the conventional Fermi liquid. While there have been extensive studies over the past three decades for such materials in two dimensions, there are few numerical studies in three dimensions. This study strives to identify the existence of the strange metal beyond two dimensions. In this work we present numerical results based on the dynamical cluster approximation to demonstrate the existence of a strange metal phase in three dimensions

Asynchronous Execution of Python Code on Task Based Runtime Systems

Despite advancements in the areas of parallel and distributed computing, the complexity of programming on High Performance Computing (HPC) resources has deterred many domain experts, especially in the areas of machine learning and artificial intelligence (AI), from utilizing performance benefits of such systems. Researchers and scientists favor high-productivity languages to avoid the inconvenience of programming in low-level languages and costs of acquiring the necessary skills required for programming at this level. In recent years, Python, with the support of linear algebra libraries like NumPy, has gained popularity despite facing limitations which prevent this code from distributed runs. Here we present a solution which maintains both high level programming abstractions as well as parallel and distributed efficiency. Phylanx, is an asynchronous array processing toolkit which transforms Python and NumPy operations into code which can be executed in parallel on HPC resources by mapping Python and NumPy functions and variables into a dependency tree executed by HPX, a general purpose, parallel, task-based runtime system written in C++. Phylanx additionally provides introspection and visualization capabilities for debugging and performance analysis. We have tested the foundations of our approach by comparing our implementation of widely used machine learning algorithms to accepted NumPy standards

Adaptive Data Migration in Load-Imbalanced HPC Applications

Distributed parallel applications need to maximize and maintain computer resource utilization and be portable across different machines. Balanced execution of some applications requires more effort than others because their data distribution changes over time. Data re-distribution at runtime requires elaborate schemes that are expensive and may benefit particular applications. This dissertation discusses a solution for HPX applications to monitor application execution with APEX and use AGAS migration to adaptively redistribute data and load balance applications at runtime to improve application performance and scaling behavior. This dissertation provides evidence for the practicality of using the Active Global Address Space as is proposed by the ParalleX model and implemented in HPX. It does so by using migration for the transparent moving of objects at runtime and using the Autonomic Performance Environment for eXascale library with experiments that run on homogeneous and heterogeneous machines at Louisiana State University, CSCS Swiss National Supercomputing Centre, and National Energy Research Scientific Computing Center

Automatic skeleton-driven performance optimizations for transactional memory

The recent shift toward multi -core chips has pushed the burden of extracting performance to the programmer. In fact, programmers now have to be able to uncover more coarse -grain parallelism with every new generation of processors, or the performance of their applications will remain roughly the same or even degrade. Unfortunately, parallel programming is still hard and error prone. This has driven the development of many new parallel programming models that aim to make this process efficient.This thesis first combines the skeleton -based and transactional memory programming models in a new framework, called OpenSkel, in order to improve performance and programmability of parallel applications. This framework provides a single skeleton that allows the implementation of transactional worklist applications. Skeleton or pattern-based programming allows parallel programs to be expressed as specialized instances of generic communication and computation patterns. This leaves the programmer with only the implementation of the particular operations required to solve the problem at hand. Thus, this programming approach simplifies parallel programming by eliminating some of the major challenges of parallel programming, namely thread communication, scheduling and orchestration. However, the application programmer has still to correctly synchronize threads on data races. This commonly requires the use of locks to guarantee atomic access to shared data. In particular, lock programming is vulnerable to deadlocks and also limits coarse grain parallelism by blocking threads that could be potentially executed in parallel.Transactional Memory (TM) thus emerges as an attractive alternative model to simplify parallel programming by removing this burden of handling data races explicitly. This model allows programmers to write parallel code as transactions, which are then guaranteed by the runtime system to execute atomically and in isolation regardless of eventual data races. TM programming thus frees the application from deadlocks and enables the exploitation of coarse grain parallelism when transactions do not conflict very often. Nevertheless, thread management and orchestration are left for the application programmer. Fortunately, this can be naturally handled by a skeleton framework. This fact makes the combination of skeleton -based and transactional programming a natural step to improve programmability since these models complement each other. In fact, this combination releases the application programmer from dealing with thread management and data races, and also inherits the performance improvements of both models. In addition to it, a skeleton framework is also amenable to skeleton - driven iii performance optimizations that exploits the application pattern and system information.This thesis thus also presents a set of pattern- oriented optimizations that are automatically selected and applied in a significant subset of transactional memory applications that shares a common pattern called worklist. These optimizations exploit the knowledge about the worklist pattern and the TM nature of the applications to avoid transaction conflicts, to prefetch data, to reduce contention etc. Using a novel autotuning mechanism, OpenSkel dynamically selects the most suitable set of these patternoriented performance optimizations for each application and adjusts them accordingly. Experimental results on a subset of five applications from the STAMP benchmark suite show that the proposed autotuning mechanism can achieve performance improvements within 2 %, on average, of a static oracle for a 16 -core UMA (Uniform Memory Access) platform and surpasses it by 7% on average for a 32 -core NUMA (Non -Uniform Memory Access) platform.Finally, this thesis also investigates skeleton -driven system- oriented performance optimizations such as thread mapping and memory page allocation. In order to do it, the OpenSkel system and also the autotuning mechanism are extended to accommodate these optimizations. The conducted experimental results on a subset of five applications from the STAMP benchmark show that the OpenSkel framework with the extended autotuning mechanism driving both pattern and system- oriented optimizations can achieve performance improvements of up to 88 %, with an average of 46 %, over a baseline version for a 16 -core UMA platform and up to 162 %, with an average of 91 %, for a 32 -core NUMA platform

E-EON : Energy-Efficient and Optimized Networks for Hadoop

Energy efficiency and performance improvements have been two of the major concerns of current Data Centers. With the advent of Big Data, more information is generated year after year, and even the most aggressive predictions of the largest network equipment manufacturer have been surpassed due to the non-stop growing network traffic generated by current Big Data frameworks. As, currently, one of the most famous and discussed frameworks designed to store, retrieve and process the information that is being consistently generated by users and machines, Hadoop has gained a lot of attention from the industry in recent years and presently its name describes a whole ecosystem designed to tackle the most varied requirements of today’s cloud applications. This thesis relates to Hadoop clusters, mainly focused on their interconnects, which is commonly considered to be the bottleneck of such ecosystem. We conducted research focusing on energy efficiency and also on performance optimizations as improvements on cluster throughput and network latency. Regarding the energy consumption, a significant proportion of a data center's energy consumption is caused by the network, which stands for 12% of the total system power at full load. With the non-stop growing network traffic, it is desired by industry and academic community that network energy consumption should be proportional to its utilization. Considering cluster performance, although Hadoop is a network throughput-sensitive workload with less stringent requirements for network latency, there is an increasing interest in running batch and interactive workloads concurrently on the same cluster. Doing so maximizes system utilization, to obtain the greatest benefits from the capital and operational expenditures. For this to happen, cluster throughput should not be impacted when network latency is minimized. The two biggest challenges faced during the development of this thesis were related to achieving near proportional energy consumption for the interconnects and also improving the network latency found on Hadoop clusters, while having virtually no loss on cluster throughput. Such challenges led to comparable sized opportunity: proposing new techniques that must solve such problems from the current generation of Hadoop clusters. We named E-EON the set of techniques presented in this work, which stands for Energy Efficient and Optimized Networks for Hadoop. E-EON can be used to reduce the network energy consumption and yet, to reduce network latency while cluster throughput is improved at the same time. Furthermore, such techniques are not exclusive to Hadoop and they are also expected to have similar benefits if applied to any other Big Data framework infrastructure that fits the problem characterization we presented throughout this thesis. With E-EON we were able to reduce the energy consumption by up to 80% compared to the state-of-the art technique. We were also able to reduce network latency by up to 85% and in some cases, even improve cluster throughput by 10%. Although these were the two major accomplishment from this thesis, we also present minor benefits which translate to easier configuration compared to the stat-of-the-art techniques. Finally, we enrich the discussions found in this thesis with recommendations targeting network administrators and network equipment manufacturers.La eficiencia energética y las mejoras de rendimiento han sido dos de las principales preocupaciones de los Data Centers actuales. Con el arribo del Big Data, se genera más información año con año, incluso las predicciones más agresivas de parte del mayor fabricante de dispositivos de red se han superado debido al continuo tráfico de red generado por los sistemas de Big Data. Actualmente, uno de los más famosos y discutidos frameworks desarrollado para almacenar, recuperar y procesar la información generada consistentemente por usuarios y máquinas, Hadoop acaparó la atención de la industria en los últimos años y actualmente su nombre describe a todo un ecosistema diseñado para abordar los requisitos más variados de las aplicaciones actuales de Cloud Computing. Esta tesis profundiza sobre los clusters Hadoop, principalmente enfocada a sus interconexiones, que comúnmente se consideran el cuello de botella de dicho ecosistema. Realizamos investigaciones centradas en la eficiencia energética y también en optimizaciones de rendimiento como mejoras en el throughput de la infraestructura y de latencia de la red. En cuanto al consumo de energía, una porción significativa de un Data Center es causada por la red, representada por el 12 % de la potencia total del sistema a plena carga. Con el tráfico constantemente creciente de la red, la industria y la comunidad académica busca que el consumo energético sea proporcional a su uso. Considerando las prestaciones del cluster, a pesar de que Hadoop mantiene una carga de trabajo sensible al rendimiento de red aunque con requisitos menos estrictos sobre la latencia de la misma, existe un interés creciente en ejecutar aplicaciones interactivas y secuenciales de manera simultánea sobre dicha infraestructura. Al hacerlo, se maximiza la utilización del sistema para obtener los mayores beneficios al capital y gastos operativos. Para que esto suceda, el rendimiento del sistema no puede verse afectado cuando se minimiza la latencia de la red. Los dos mayores desafíos enfrentados durante el desarrollo de esta tesis estuvieron relacionados con lograr un consumo energético cercano a la cantidad de interconexiones y también a mejorar la latencia de red encontrada en los clusters Hadoop al tiempo que la perdida del rendimiento de la infraestructura es casi nula. Dichos desafíos llevaron a una oportunidad de tamaño semejante: proponer técnicas novedosas que resuelven dichos problemas a partir de la generación actual de clusters Hadoop. Llamamos a E-EON (Energy Efficient and Optimized Networks) al conjunto de técnicas presentadas en este trabajo. E-EON se puede utilizar para reducir el consumo de energía y la latencia de la red al mismo tiempo que el rendimiento del cluster se mejora. Además tales técnicas no son exclusivas de Hadoop y también se espera que tengan beneficios similares si se aplican a cualquier otra infraestructura de Big Data que se ajuste a la caracterización del problema que presentamos a lo largo de esta tesis. Con E-EON pudimos reducir el consumo de energía hasta en un 80% en comparación con las técnicas encontradas en la literatura actual. También pudimos reducir la latencia de la red hasta en un 85% y, en algunos casos, incluso mejorar el rendimiento del cluster en un 10%. Aunque estos fueron los dos principales logros de esta tesis, también presentamos beneficios menores que se traducen en una configuración más sencilla en comparación con las técnicas más avanzadas. Finalmente, enriquecimos las discusiones encontradas en esta tesis con recomendaciones dirigidas a los administradores de red y a los fabricantes de dispositivos de red

Optimization techniques for fine-grained communication in PGAS environments

Partitioned Global Address Space (PGAS) languages promise to deliver improved programmer productivity and good performance in large-scale parallel machines. However, adequate performance for applications that rely on fine-grained communication without compromising their programmability is difficult to achieve. Manual or compiler assistance code optimization is required to avoid fine-grained accesses. The downside of manually applying code transformations is the increased program complexity and hindering of the programmer productivity. On the other hand, compiler optimizations of fine-grained accesses require knowledge of physical data mapping and the use of parallel loop constructs. This thesis presents optimizations for solving the three main challenges of the fine-grain communication: (i) low network communication efficiency; (ii) large number of runtime calls; and (iii) network hotspot creation for the non-uniform distribution of network communication, To solve this problems, the dissertation presents three approaches. First, it presents an improved inspector-executor transformation to improve the network efficiency through runtime aggregation. Second, it presents incremental optimizations to the inspector-executor loop transformation to automatically remove the runtime calls. Finally, the thesis presents a loop scheduling loop transformation for avoiding network hotspots and the oversubscription of nodes. In contrast to previous work that use static coalescing, prefetching, limited privatization, and caching, the solutions presented in this thesis focus cover all the aspect of fine-grained communication, including reducing the number of calls generated by the compiler and minimizing the overhead of the inspector-executor optimization. A performance evaluation with various microbenchmarks and benchmarks, aiming at predicting scaling and absolute performance numbers of a Power 775 machine, indicates that applications with regular accesses can achieve up to 180% of the performance of hand-optimized versions, while in applications with irregular accesses the transformations are expected to yield from 1.12X up to 6.3X speedup. The loop scheduling shows performance gains from 3-25% for NAS FT and bucket-sort benchmarks, and up to 3.4X speedup for the microbenchmarks

Passive available bandwidth: Applying self -induced congestion analysis of application-generated traffic

Monitoring end-to-end available bandwidth is critical in helping applications and users efficiently use network resources. Because the performance of distributed systems is intrinsically linked to the performance of the network, applications that have knowledge of the available bandwidth can adapt to changing network conditions and optimize their performance. A well-designed available bandwidth tool should be easily deployable and non-intrusive. While several tools have been created to actively measure the end-to-end available bandwidth of a network path, they require instrumentation at both ends of the path, and the traffic injected by these tools may affect the performance of other applications on the path.;We propose a new passive monitoring system that accurately measures available bandwidth by applying self-induced congestion analysis to traces of application-generated traffic. The Watching Resources from the Edge of the Network (Wren) system transparently provides available bandwidth information to applications without having to modify the applications to make the measurements and with negligible impact on the performance of applications. Wren produces a series of real-time available bandwidth measurements that can be used by applications to adapt their runtime behavior to optimize performance or that can be sent to a central monitoring system for use by other or future applications.;Most active bandwidth tools rely on adjustments to the sending rate of packets to infer the available bandwidth. The major obstacle with using passive kernel-level traces of TCP traffic is that we have no control over the traffic pattern. We demonstrate that there is enough natural variability in the sending rates of TCP traffic that techniques used by active tools can be applied to traces of application-generated traffic to yield accurate available bandwidth measurements.;Wren uses kernel-level instrumentation to collect traces of application traffic and analyzes the traces in the user-level to achieve the necessary accuracy and avoid intrusiveness. We introduce new passive bandwidth algorithms based on the principles of the active tools to measure available bandwidth, investigate the effectiveness of these new algorithms, implement a real-time system capable of efficiently monitoring available bandwidth, and demonstrate that applications can use Wren measurements to adapt their runtime decisions