Sublinear-Time Algorithms for Monomer-Dimer Systems on Bounded Degree Graphs

For a graph $G$, let $Z(G,\lambda)$ be the partition function of the monomer-dimer system defined by $\sum_k m_k(G)\lambda^k$, where $m_k(G)$ is the number of matchings of size $k$ in $G$. We consider graphs of bounded degree and develop a sublinear-time algorithm for estimating $\log Z(G,\lambda)$ at an arbitrary value $\lambda>0$ within additive error $\epsilon n$ with high probability. The query complexity of our algorithm does not depend on the size of $G$ and is polynomial in $1/\epsilon$, and we also provide a lower bound quadratic in $1/\epsilon$ for this problem. This is the first analysis of a sublinear-time approximation algorithm for a # P-complete problem. Our approach is based on the correlation decay of the Gibbs distribution associated with $Z(G,\lambda)$. We show that our algorithm approximates the probability for a vertex to be covered by a matching, sampled according to this Gibbs distribution, in a near-optimal sublinear time. We extend our results to approximate the average size and the entropy of such a matching within an additive error with high probability, where again the query complexity is polynomial in $1/\epsilon$ and the lower bound is quadratic in $1/\epsilon$. Our algorithms are simple to implement and of practical use when dealing with massive datasets. Our results extend to other systems where the correlation decay is known to hold as for the independent set problem up to the critical activity

Quantitative Modeling and Verification of Evolving Software

Mit der steigenden Nachfrage nach Innovationen spielt Software in verschiedenenWirtschaftsbereichen eine wichtige Rolle, wie z.B. in der Automobilindustrie, bei intelligenten Systemen als auch bei Kommunikationssystemen. Daher ist die Qualität für die Softwareentwicklung von großer Bedeutung. Allerdings ändern sich die probabilistische Modelle (die Qualitätsbewertungsmodelle) angesichts der dynamischen Natur moderner Softwaresysteme. Dies führt dazu, dass ihre Übergangswahrscheinlichkeiten im Laufe der Zeit schwanken, welches zu erheblichen Problemen führt. Dahingehend werden probabilistische Modelle im Hinblick auf ihre Laufzeit kontinuierlich aktualisiert. Eine fortdauernde Neubewertung komplexer Wahrscheinlichkeitsmodelle ist jedoch teuer. In letzter Zeit haben sich inkrementelle Ansätze als vielversprechend für die Verifikation von adaptiven Systemen erwiesen. Trotzdem wurden bei der Bewertung struktureller Änderungen im Modell noch keine wesentlichen Verbesserungen erzielt. Wahrscheinlichkeitssysteme werden als Automaten modelliert, wie bei Markov-Modellen. Solche Modelle können in Matrixform dargestellt werden, um die Gleichungen basierend auf Zuständen und Übergangswahrscheinlichkeiten zu lösen. Laufzeitmodelle wie Matrizen sind nicht signifikant, um die Auswirkungen von Modellveränderungen erkennen zu können. In dieser Arbeit wird ein Framework unter Verwendung stochastischer Bäume mit regulären Ausdrücken entwickelt, welches modular aufgebaut ist und eine aktionshaltige sowie probabilistische Logik im Kontext der Modellprüfung aufweist. Ein solches modulares Framework ermöglicht dem Menschen die Entwicklung der Änderungsoperationen für die inkrementelle Berechnung lokaler Änderungen, die im Modell auftreten können. Darüber hinaus werden probabilistische Änderungsmuster beschrieben, um eine effiziente inkrementelle Verifizierung, unter Verwendung von Bäumen mit regulären Ausdrücken, anwenden zu können. Durch die Bewertung der Ergebnisse wird der Vorgang abgeschlossen.Software plays an innovative role in many different domains, such as car industry, autonomous and smart systems, and communication. Hence, the quality of the software is of utmost importance and needs to be properly addressed during software evolution. Several approaches have been developed to evaluate systems’ quality attributes, such as reliability, safety, and performance of software. Due to the dynamic nature of modern software systems, probabilistic models representing the quality of the software and their transition probabilities change over time and fluctuate, leading to a significant problem that needs to be solved to obtain correct evaluation results of quantitative properties. Probabilistic models need to be continually updated at run-time to solve this issue. However, continuous re-evaluation of complex probabilistic models is expensive. Recently, incremental approaches have been found to be promising for the verification of evolving and self-adaptive systems. Nevertheless, substantial improvements have not yet been achieved for evaluating structural changes in the model. Probabilistic systems are usually represented in a matrix form to solve the equations based on states and transition probabilities. On the other side, evolutionary changes can create various effects on theese models and force them to re-verify the whole system. Run-time models, such as matrices or graph representations, lack the expressiveness to identify the change effect on the model. In this thesis, we develop a framework using stochastic regular expression trees, which are modular, with action-based probabilistic logic in the model checking context. Such a modular framework enables us to develop change operations for the incremental computation of local changes that can occur in the model. Furthermore, we describe probabilistic change patterns to apply efficient incremental quantitative verification using stochastic regular expression trees and evaluate our results

Correlation function for the Grid-Poisson Euclidean matching on a line and on a circle

We compute the two-point correlation function for spin configurations which are obtained by solving the Euclidean matching problem, for one family of points on a grid, and the second family chosen uniformly at random, when the cost depends on a power $p$ of the Euclidean distance. We provide the analytic solution in the thermodynamic limit, in a number of cases ($p>1$ open b.c.\ and $p=2$ periodic b.c., both at criticality), and analyse numerically other parts of the phase diagram.Comment: 34 pages, 10 figure

Black holes and the butterfly effect

We use holography to study sensitive dependence on initial conditions in strongly coupled field theories. Specifically, we mildly perturb a thermofield double state by adding a small number of quanta on one side. If these quanta are released a scrambling time in the past, they destroy the local two-sided correlations present in the unperturbed state. The corresponding bulk geometry is a two-sided AdS black hole, and the key effect is the blueshift of the early infalling quanta relative to the $t = 0$ slice, creating a shock wave. We comment on string- and Planck-scale corrections to this setup, and discuss points that may be relevant to the firewall controversy.Comment: 29 pages, 4 figures. v2: references added/clarified, typos corrected. v3: reference added, referencing clarifie

Sparse approaches for the exact distribution of patterns in long state sequences generated by a Markov source

We present two novel approaches for the computation of the exact distribution of a pattern in a long sequence. Both approaches take into account the sparse structure of the problem and are two-part algorithms. The first approach relies on a partial recursion after a fast computation of the second largest eigenvalue of the transition matrix of a Markov chain embedding. The second approach uses fast Taylor expansions of an exact bivariate rational reconstruction of the distribution. We illustrate the interest of both approaches on a simple toy-example and two biological applications: the transcription factors of the Human Chromosome 5 and the PROSITE signatures of functional motifs in proteins. On these example our methods demonstrate their complementarity and their hability to extend the domain of feasibility for exact computations in pattern problems to a new level

Entropy of Some Models of Sparse Random Graphs With Vertex-Names

Consider the setting of sparse graphs on N vertices, where the vertices have distinct "names", which are strings of length O(log N) from a fixed finite alphabet. For many natural probability models, the entropy grows as cN log N for some model-dependent rate constant c. The mathematical content of this paper is the (often easy) calculation of c for a variety of models, in particular for various standard random graph models adapted to this setting. Our broader purpose is to publicize this particular setting as a natural setting for future theoretical study of data compression for graphs, and (more speculatively) for discussion of unorganized versus organized complexity.Comment: 31 page

Explain3D: Explaining Disagreements in Disjoint Datasets

Data plays an important role in applications, analytic processes, and many aspects of human activity. As data grows in size and complexity, we are met with an imperative need for tools that promote understanding and explanations over data-related operations. Data management research on explanations has focused on the assumption that data resides in a single dataset, under one common schema. But the reality of today's data is that it is frequently un-integrated, coming from different sources with different schemas. When different datasets provide different answers to semantically similar questions, understanding the reasons for the discrepancies is challenging and cannot be handled by the existing single-dataset solutions. In this paper, we propose Explain3D, a framework for explaining the disagreements across disjoint datasets (3D). Explain3D focuses on identifying the reasons for the differences in the results of two semantically similar queries operating on two datasets with potentially different schemas. Our framework leverages the queries to perform a semantic mapping across the relevant parts of their provenance; discrepancies in this mapping point to causes of the queries' differences. Exploiting the queries gives Explain3D an edge over traditional schema matching and record linkage techniques, which are query-agnostic. Our work makes the following contributions: (1) We formalize the problem of deriving optimal explanations for the differences of the results of semantically similar queries over disjoint datasets. (2) We design a 3-stage framework for solving the optimal explanation problem. (3) We develop a smart-partitioning optimizer that improves the efficiency of the framework by orders of magnitude. (4)~We experiment with real-world and synthetic data to demonstrate that Explain3D can derive precise explanations efficiently