162 research outputs found
A non-rigid registration approach for quantifying myocardial contraction in tagged MRI using generalized information measures.
International audienceWe address the problem of quantitatively assessing myocardial function from tagged MRI sequences. We develop a two-step method comprising (i) a motion estimation step using a novel variational non-rigid registration technique based on generalized information measures, and (ii) a measurement step, yielding local and segmental deformation parameters over the whole myocardium. Experiments on healthy and pathological data demonstrate that this method delivers, within a reasonable computation time and in a fully unsupervised way, reliable measurements for normal subjects and quantitative pathology-specific information. Beyond cardiac MRI, this work redefines the foundations of variational non-rigid registration for information-theoretic similarity criteria with potential interest in multimodal medical imaging
Analysis of cardiac motion using MRI and nonrigid image registration
Imperial Users onl
-Metric: An N-Dimensional Information-Theoretic Framework for Groupwise Registration and Deep Combined Computing
This paper presents a generic probabilistic framework for estimating the
statistical dependency and finding the anatomical correspondences among an
arbitrary number of medical images. The method builds on a novel formulation of
the -dimensional joint intensity distribution by representing the common
anatomy as latent variables and estimating the appearance model with
nonparametric estimators. Through connection to maximum likelihood and the
expectation-maximization algorithm, an information\hyp{}theoretic metric called
-metric and a co-registration algorithm named -CoReg
are induced, allowing groupwise registration of the observed images with
computational complexity of . Moreover, the method naturally
extends for a weakly-supervised scenario where anatomical labels of certain
images are provided. This leads to a combined\hyp{}computing framework
implemented with deep learning, which performs registration and segmentation
simultaneously and collaboratively in an end-to-end fashion. Extensive
experiments were conducted to demonstrate the versatility and applicability of
our model, including multimodal groupwise registration, motion correction for
dynamic contrast enhanced magnetic resonance images, and deep combined
computing for multimodal medical images. Results show the superiority of our
method in various applications in terms of both accuracy and efficiency,
highlighting the advantage of the proposed representation of the imaging
process
An image segmentation and registration approach to cardiac function analysis using MRI
Cardiovascular diseases (CVDs) are one of the major causes of death in the world. In recent
years, significant progress has been made in the care and treatment of patients with such
diseases. A crucial factor for this progress has been the development of magnetic resonance
(MR) imaging which makes it possible to diagnose and assess the cardiovascular function
of the patient. The ability to obtain high-resolution, cine volume images easily and safely
has made it the preferred method for diagnosis of CVDs. MRI is also unique in its ability
to introduce noninvasive markers directly into the tissue being imaged(MR tagging) during
the image acquisition process. With the development of advanced MR imaging acquisition
technologies, 3D MR imaging is more and more clinically feasible. This recent development has
allowed new potentially 3D image analysis technologies to be deployed. However, quantitative
analysis of cardiovascular system from the images remains a challenging topic.
The work presented in this thesis describes the development of segmentation and motion
analysis techniques for the study of the cardiac anatomy and function in cardiac magnetic
resonance (CMR) images. The first main contribution of the thesis is the development of a fully
automatic cardiac segmentation technique that integrates and combines a series of state-of-the-art
techniques. The proposed segmentation technique is capable of generating an accurate 3D
segmentation from multiple image sequences. The proposed segmentation technique is robust
even in the presence of pathological changes, large anatomical shape variations and locally
varying contrast in the images.
Another main contribution of this thesis is the development of motion tracking techniques that
can integrate motion information from different sources. For example, the radial motion of
the myocardium can be tracked easily in untagged MR imaging since the epi- and endocardial
surfaces are clearly visible. On the other hand, tagged MR imaging allows easy tracking of
both longitudinal and circumferential motion. We propose a novel technique based on non-rigid
image registration for the myocardial motion estimation using both untagged and 3D tagged MR
images. The novel aspect of our technique is its simultaneous use of complementary information
from both untagged and 3D tagged MR imaging. The similarity measure is spatially weighted
to maximise the utility of information from both images.
The thesis also proposes a sparse representation for free-form deformations (FFDs) using the principles of compressed sensing. The sparse free-form deformation (SFFD) model can
capture fine local details such as motion discontinuities without sacrificing robustness. We
demonstrate the capabilities of the proposed framework to accurately estimate smooth as well
as discontinuous deformations in 2D and 3D CMR image sequences. Compared to the standard
FFD approach, a significant increase in registration accuracy can be observed in datasets with
discontinuous motion patterns.
Both the segmentation and motion tracking techniques presented in this thesis have been
applied to clinical studies. We focus on two important clinical applications that can be
addressed by the techniques proposed in this thesis. The first clinical application aims
at measuring longitudinal changes in cardiac morphology and function during the cardiac
remodelling process. The second clinical application aims at selecting patients that positively
respond to cardiac resynchronization therapy (CRT).
The final chapter of this thesis summarises the main conclusions that can be drawn from the
work presented here and also discusses possible avenues for future research
Hypothesis Validation of Far-Wall Brightness in Carotid-Artery Ultrasound for Feature-Based IMT Measurement Using a Combination of Level-Set Segmentation and Registration
Intima-media thickness (IMT) is now being considered as an indicator of atherosclerosis. Our group has developed several feature-based IMT measurement algorithms such as the Completely Automated Layer EXtraction (CALEX) (which is a class of patented AtheroEdge Systems from Global Biomedical Technologies, Inc., CA, USA). These methods are based on the hypothesis that the highest pixel intensities are in the far wall of the common carotid artery (CCA) or the internal carotid artery (ICA). In this paper, we verify that this hypothesis holds true for B-mode longitudinal ultrasound (US) images of the carotid wall. This patented methodology consists of generating the composite image (the arithmetic sum of images) from the database by first registering the carotid image frames with respect to a nearly straight carotid-artery frame from the same database using: 1) B-spline-based nonrigid registration and 2) affine registration. Prior to registration, we segment the carotid-artery lumen using a level-set-based algorithm followed by morphological image processing. The binary lumen images are registered, and the transformations are applied to the original grayscale CCA images. We evaluated our technique using a database of 200 common carotid images of normal and pathologic carotids. The composite image presented the highest intensity distribution in the far wall of the CCA/ICA, validating our hypothesis. We have also demonstrated the accuracy and improvement in the IMT segmentation result with our CALEX 3.0 system. The CALEX system, when run on newly acquired US images, shows the IMT error of about 30 mu m. Thus, we have shown that the CALEX algorithm is able to exploit the far-wall brightness for accurate IMT measurements
Automatic Spatiotemporal Analysis of Cardiac Image Series
RÉSUMÉ
Ă€ ce jour, les maladies cardiovasculaires demeurent au premier rang des principales causes de
décès en Amérique du Nord. Chez l’adulte et au sein de populations de plus en plus jeunes,
la soi-disant épidémie d’obésité entraînée par certaines habitudes de vie tels que la mauvaise
alimentation, le manque d’exercice et le tabagisme est lourde de conséquences pour les personnes
affectées, mais aussi sur le système de santé. La principale cause de morbidité et de
mortalité chez ces patients est l’athérosclérose, une accumulation de plaque à l’intérieur des
vaisseaux sanguins à hautes pressions telles que les artères coronaires. Les lésions athérosclérotiques
peuvent entraîner l’ischémie en bloquant la circulation sanguine et/ou en provoquant
une thrombose. Cela mène souvent à de graves conséquences telles qu’un infarctus. Outre les
problèmes liés à la sténose, les parois artérielles des régions criblées de plaque augmentent la
rigidité des parois vasculaires, ce qui peut aggraver la condition du patient. Dans la population
pédiatrique, la pathologie cardiovasculaire acquise la plus fréquente est la maladie de
Kawasaki. Il s’agit d’une vasculite aigüe pouvant affecter l’intégrité structurale des parois des
artères coronaires et mener à la formation d’anévrismes. Dans certains cas, ceux-ci entravent
l’hémodynamie artérielle en engendrant une perfusion myocardique insuffisante et en activant
la formation de thromboses.
Le diagnostic de ces deux maladies coronariennes sont traditionnellement effectués à l’aide
d’angiographies par fluoroscopie. Pendant ces examens paracliniques, plusieurs centaines de
projections radiographiques sont acquises en séries suite à l’infusion artérielle d’un agent de
contraste. Ces images révèlent la lumière des vaisseaux sanguins et la présence de lésions
potentiellement pathologiques, s’il y a lieu. Parce que les séries acquises contiennent de l’information
très dynamique en termes de mouvement du patient volontaire et involontaire (ex.
battements cardiaques, respiration et déplacement d’organes), le clinicien base généralement
son interprétation sur une seule image angiographique où des mesures géométriques sont effectuées
manuellement ou semi-automatiquement par un technicien en radiologie. Bien que
l’angiographie par fluoroscopie soit fréquemment utilisé partout dans le monde et souvent
considéré comme l’outil de diagnostic “gold-standard” pour de nombreuses maladies vasculaires,
la nature bidimensionnelle de cette modalité d’imagerie est malheureusement très
limitante en termes de spécification géométrique des différentes régions pathologiques. En effet,
la structure tridimensionnelle des sténoses et des anévrismes ne peut pas être pleinement
appréciée en 2D car les caractéristiques observées varient selon la configuration angulaire de
l’imageur. De plus, la présence de lésions affectant les artères coronaires peut ne pas refléter
la véritable santé du myocarde, car des mécanismes compensatoires naturels (ex. vaisseaux----------ABSTRACT
Cardiovascular disease continues to be the leading cause of death in North America. In adult
and, alarmingly, ever younger populations, the so-called obesity epidemic largely driven by
lifestyle factors that include poor diet, lack of exercise and smoking, incurs enormous stresses
on the healthcare system. The primary cause of serious morbidity and mortality for these
patients is atherosclerosis, the build up of plaque inside high pressure vessels like the coronary
arteries. These lesions can lead to ischemic disease and may progress to precarious blood
flow blockage or thrombosis, often with infarction or other severe consequences. Besides
the stenosis-related outcomes, the arterial walls of plaque-ridden regions manifest increased
stiffness, which may exacerbate negative patient prognosis. In pediatric populations, the
most prevalent acquired cardiovascular pathology is Kawasaki disease. This acute vasculitis
may affect the structural integrity of coronary artery walls and progress to aneurysmal lesions.
These can hinder the blood flow’s hemodynamics, leading to inadequate downstream
perfusion, and may activate thrombus formation which may lead to precarious prognosis.
Diagnosing these two prominent coronary artery diseases is traditionally performed using
fluoroscopic angiography. Several hundred serial x-ray projections are acquired during selective
arterial infusion of a radiodense contrast agent, which reveals the vessels’ luminal
area and possible pathological lesions. The acquired series contain highly dynamic information
on voluntary and involuntary patient movement: respiration, organ displacement and
heartbeat, for example. Current clinical analysis is largely limited to a single angiographic
image where geometrical measures will be performed manually or semi-automatically by a
radiological technician. Although widely used around the world and generally considered
the gold-standard diagnosis tool for many vascular diseases, the two-dimensional nature of
this imaging modality is limiting in terms of specifying the geometry of various pathological
regions. Indeed, the 3D structures of stenotic or aneurysmal lesions may not be fully appreciated
in 2D because their observable features are dependent on the angular configuration of
the imaging gantry. Furthermore, the presence of lesions in the coronary arteries may not
reflect the true health of the myocardium, as natural compensatory mechanisms may obviate
the need for further intervention. In light of this, cardiac magnetic resonance perfusion
imaging is increasingly gaining attention and clinical implementation, as it offers a direct
assessment of myocardial tissue viability following infarction or suspected coronary artery
disease. This type of modality is plagued, however, by motion similar to that present in fluoroscopic
imaging. This issue predisposes clinicians to laborious manual intervention in order
to align anatomical structures in sequential perfusion frames, thus hindering automation o
Automatic Spatiotemporal Analysis of Cardiac Image Series
RÉSUMÉ
Ă€ ce jour, les maladies cardiovasculaires demeurent au premier rang des principales causes de
décès en Amérique du Nord. Chez l’adulte et au sein de populations de plus en plus jeunes,
la soi-disant épidémie d’obésité entraînée par certaines habitudes de vie tels que la mauvaise
alimentation, le manque d’exercice et le tabagisme est lourde de conséquences pour les personnes
affectées, mais aussi sur le système de santé. La principale cause de morbidité et de
mortalité chez ces patients est l’athérosclérose, une accumulation de plaque à l’intérieur des
vaisseaux sanguins à hautes pressions telles que les artères coronaires. Les lésions athérosclérotiques
peuvent entraîner l’ischémie en bloquant la circulation sanguine et/ou en provoquant
une thrombose. Cela mène souvent à de graves conséquences telles qu’un infarctus. Outre les
problèmes liés à la sténose, les parois artérielles des régions criblées de plaque augmentent la
rigidité des parois vasculaires, ce qui peut aggraver la condition du patient. Dans la population
pédiatrique, la pathologie cardiovasculaire acquise la plus fréquente est la maladie de
Kawasaki. Il s’agit d’une vasculite aigüe pouvant affecter l’intégrité structurale des parois des
artères coronaires et mener à la formation d’anévrismes. Dans certains cas, ceux-ci entravent
l’hémodynamie artérielle en engendrant une perfusion myocardique insuffisante et en activant
la formation de thromboses.
Le diagnostic de ces deux maladies coronariennes sont traditionnellement effectués à l’aide
d’angiographies par fluoroscopie. Pendant ces examens paracliniques, plusieurs centaines de
projections radiographiques sont acquises en séries suite à l’infusion artérielle d’un agent de
contraste. Ces images révèlent la lumière des vaisseaux sanguins et la présence de lésions
potentiellement pathologiques, s’il y a lieu. Parce que les séries acquises contiennent de l’information
très dynamique en termes de mouvement du patient volontaire et involontaire (ex.
battements cardiaques, respiration et déplacement d’organes), le clinicien base généralement
son interprétation sur une seule image angiographique où des mesures géométriques sont effectuées
manuellement ou semi-automatiquement par un technicien en radiologie. Bien que
l’angiographie par fluoroscopie soit fréquemment utilisé partout dans le monde et souvent
considéré comme l’outil de diagnostic “gold-standard” pour de nombreuses maladies vasculaires,
la nature bidimensionnelle de cette modalité d’imagerie est malheureusement très
limitante en termes de spécification géométrique des différentes régions pathologiques. En effet,
la structure tridimensionnelle des sténoses et des anévrismes ne peut pas être pleinement
appréciée en 2D car les caractéristiques observées varient selon la configuration angulaire de
l’imageur. De plus, la présence de lésions affectant les artères coronaires peut ne pas refléter
la véritable santé du myocarde, car des mécanismes compensatoires naturels (ex. vaisseaux----------ABSTRACT
Cardiovascular disease continues to be the leading cause of death in North America. In adult
and, alarmingly, ever younger populations, the so-called obesity epidemic largely driven by
lifestyle factors that include poor diet, lack of exercise and smoking, incurs enormous stresses
on the healthcare system. The primary cause of serious morbidity and mortality for these
patients is atherosclerosis, the build up of plaque inside high pressure vessels like the coronary
arteries. These lesions can lead to ischemic disease and may progress to precarious blood
flow blockage or thrombosis, often with infarction or other severe consequences. Besides
the stenosis-related outcomes, the arterial walls of plaque-ridden regions manifest increased
stiffness, which may exacerbate negative patient prognosis. In pediatric populations, the
most prevalent acquired cardiovascular pathology is Kawasaki disease. This acute vasculitis
may affect the structural integrity of coronary artery walls and progress to aneurysmal lesions.
These can hinder the blood flow’s hemodynamics, leading to inadequate downstream
perfusion, and may activate thrombus formation which may lead to precarious prognosis.
Diagnosing these two prominent coronary artery diseases is traditionally performed using
fluoroscopic angiography. Several hundred serial x-ray projections are acquired during selective
arterial infusion of a radiodense contrast agent, which reveals the vessels’ luminal
area and possible pathological lesions. The acquired series contain highly dynamic information
on voluntary and involuntary patient movement: respiration, organ displacement and
heartbeat, for example. Current clinical analysis is largely limited to a single angiographic
image where geometrical measures will be performed manually or semi-automatically by a
radiological technician. Although widely used around the world and generally considered
the gold-standard diagnosis tool for many vascular diseases, the two-dimensional nature of
this imaging modality is limiting in terms of specifying the geometry of various pathological
regions. Indeed, the 3D structures of stenotic or aneurysmal lesions may not be fully appreciated
in 2D because their observable features are dependent on the angular configuration of
the imaging gantry. Furthermore, the presence of lesions in the coronary arteries may not
reflect the true health of the myocardium, as natural compensatory mechanisms may obviate
the need for further intervention. In light of this, cardiac magnetic resonance perfusion
imaging is increasingly gaining attention and clinical implementation, as it offers a direct
assessment of myocardial tissue viability following infarction or suspected coronary artery
disease. This type of modality is plagued, however, by motion similar to that present in fluoroscopic
imaging. This issue predisposes clinicians to laborious manual intervention in order
to align anatomical structures in sequential perfusion frames, thus hindering automation o
Medical Image Analysis: Progress over two decades and the challenges ahead
International audienceThe analysis of medical images has been woven into the fabric of the pattern analysis and machine intelligence (PAMI) community since the earliest days of these Transactions. Initially, the efforts in this area were seen as applying pattern analysis and computer vision techniques to another interesting dataset. However, over the last two to three decades, the unique nature of the problems presented within this area of study have led to the development of a new discipline in its own right. Examples of these include: the types of image information that are acquired, the fully three-dimensional image data, the nonrigid nature of object motion and deformation, and the statistical variation of both the underlying normal and abnormal ground truth. In this paper, we look at progress in the field over the last 20 years and suggest some of the challenges that remain for the years to come
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