Neurocognitive Informatics Manifesto.

Informatics studies all aspects of the structure of natural and artificial information systems. Theoretical and abstract approaches to information have made great advances, but human information processing is still unmatched in many areas, including information management, representation and understanding. Neurocognitive informatics is a new, emerging field that should help to improve the matching of artificial and natural systems, and inspire better computational algorithms to solve problems that are still beyond the reach of machines. In this position paper examples of neurocognitive inspirations and promising directions in this area are given

Ground truth? Concept-based communities versus the external classification of physics manuscripts

Community detection techniques are widely used to infer hidden structures within interconnected systems. Despite demonstrating high accuracy on benchmarks, they reproduce the external classification for many real-world systems with a significant level of discrepancy. A widely accepted reason behind such outcome is the unavoidable loss of non-topological information (such as node attributes) encountered when the original complex system is represented as a network. In this article we emphasize that the observed discrepancies may also be caused by a different reason: the external classification itself. For this end we use scientific publication data which i) exhibit a well defined modular structure and ii) hold an expert-made classification of research articles. Having represented the articles and the extracted scientific concepts both as a bipartite network and as its unipartite projection, we applied modularity optimization to uncover the inner thematic structure. The resulting clusters are shown to partly reflect the author-made classification, although some significant discrepancies are observed. A detailed analysis of these discrepancies shows that they carry essential information about the system, mainly related to the use of similar techniques and methods across different (sub)disciplines, that is otherwise omitted when only the external classification is considered.Comment: 15 pages, 2 figure

Semi-supervised model-based clustering with controlled clusters leakage

In this paper, we focus on finding clusters in partially categorized data sets. We propose a semi-supervised version of Gaussian mixture model, called C3L, which retrieves natural subgroups of given categories. In contrast to other semi-supervised models, C3L is parametrized by user-defined leakage level, which controls maximal inconsistency between initial categorization and resulting clustering. Our method can be implemented as a module in practical expert systems to detect clusters, which combine expert knowledge with true distribution of data. Moreover, it can be used for improving the results of less flexible clustering techniques, such as projection pursuit clustering. The paper presents extensive theoretical analysis of the model and fast algorithm for its efficient optimization. Experimental results show that C3L finds high quality clustering model, which can be applied in discovering meaningful groups in partially classified data

A COMPARATIVE STUDY ON ONTOLOGY GENERATION AND TEXT CLUSTERING USING VSM, LSI, AND DOCUMENT ONTOLOGY MODELS

Although using ontologies to assist information retrieval and text document processing has recently attracted more and more attention, existing ontology-based approaches have not shown advantages over the traditional keywords-based Latent Semantic Indexing (LSI) method. This paper proposes an algorithm to extract a concept forest (CF) from a document with the assistance of a natural language ontology, the WordNet lexical database. Using concept forests to represent the semantics of text documents, the semantic similarities of these documents are then measured as the commonalities of their concept forests. Performance studies of text document clustering based on different document similarity measurement methods show that the CF-based similarity measurement is an effective alternative to the existing keywords-based methods. Especially, this CF-based approach has obvious advantages over the existing keywords-based methods, including LSI, in dealing with text abstract databases, such as MEDLINE, or in P2P environments where it is impractical to collect the entire document corpus for analysis

Exploiting multimedia in creating and analysing multimedia Web archives

The data contained on the web and the social web are inherently multimedia and consist of a mixture of textual, visual and audio modalities. Community memories embodied on the web and social web contain a rich mixture of data from these modalities. In many ways, the web is the greatest resource ever created by human-kind. However, due to the dynamic and distributed nature of the web, its content changes, appears and disappears on a daily basis. Web archiving provides a way of capturing snapshots of (parts of) the web for preservation and future analysis. This paper provides an overview of techniques we have developed within the context of the EU funded ARCOMEM (ARchiving COmmunity MEMories) project to allow multimedia web content to be leveraged during the archival process and for post-archival analysis. Through a set of use cases, we explore several practical applications of multimedia analytics within the realm of web archiving, web archive analysis and multimedia data on the web in general

Concept graphs: Applications to biomedical text categorization and concept extraction

As science advances, the underlying literature grows rapidly providing valuable knowledge mines for researchers and practitioners. The text content that makes up these knowledge collections is often unstructured and, thus, extracting relevant or novel information could be nontrivial and costly. In addition, human knowledge and expertise are being transformed into structured digital information in the form of vocabulary databases and ontologies. These knowledge bases hold substantial hierarchical and semantic relationships of common domain concepts. Consequently, automating learning tasks could be reinforced with those knowledge bases through constructing human-like representations of knowledge. This allows developing algorithms that simulate the human reasoning tasks of content perception, concept identification, and classification. This study explores the representation of text documents using concept graphs that are constructed with the help of a domain ontology. In particular, the target data sets are collections of biomedical text documents, and the domain ontology is a collection of predefined biomedical concepts and relationships among them. The proposed representation preserves those relationships and allows using the structural features of graphs in text mining and learning algorithms. Those features emphasize the significance of the underlying relationship information that exists in the text content behind the interrelated topics and concepts of a text document. The experiments presented in this study include text categorization and concept extraction applied on biomedical data sets. The experimental results demonstrate how the relationships extracted from text and captured in graph structures can be used to improve the performance of the aforementioned applications. The discussed techniques can be used in creating and maintaining digital libraries through enhancing indexing, retrieval, and management of documents as well as in a broad range of domain-specific applications such as drug discovery, hypothesis generation, and the analysis of molecular structures in chemoinformatics