738 research outputs found
Accelerating Cosmic Microwave Background map-making procedure through preconditioning
Estimation of the sky signal from sequences of time ordered data is one of
the key steps in Cosmic Microwave Background (CMB) data analysis, commonly
referred to as the map-making problem. Some of the most popular and general
methods proposed for this problem involve solving generalised least squares
(GLS) equations with non-diagonal noise weights given by a block-diagonal
matrix with Toeplitz blocks. In this work we study new map-making solvers
potentially suitable for applications to the largest anticipated data sets.
They are based on iterative conjugate gradient (CG) approaches enhanced with
novel, parallel, two-level preconditioners. We apply the proposed solvers to
examples of simulated non-polarised and polarised CMB observations, and a set
of idealised scanning strategies with sky coverage ranging from nearly a full
sky down to small sky patches. We discuss in detail their implementation for
massively parallel computational platforms and their performance for a broad
range of parameters characterising the simulated data sets. We find that our
best new solver can outperform carefully-optimised standard solvers used today
by a factor of as much as 5 in terms of the convergence rate and a factor of up
to in terms of the time to solution, and to do so without significantly
increasing the memory consumption and the volume of inter-processor
communication. The performance of the new algorithms is also found to be more
stable and robust, and less dependent on specific characteristics of the
analysed data set. We therefore conclude that the proposed approaches are well
suited to address successfully challenges posed by new and forthcoming CMB data
sets.Comment: 19 pages // Final version submitted to A&
Accelerating Cosmic Microwave Background map-making procedure through preconditioning
Estimation of the sky signal from sequences of time ordered data is one of
the key steps in Cosmic Microwave Background (CMB) data analysis, commonly
referred to as the map-making problem. Some of the most popular and general
methods proposed for this problem involve solving generalised least squares
(GLS) equations with non-diagonal noise weights given by a block-diagonal
matrix with Toeplitz blocks. In this work we study new map-making solvers
potentially suitable for applications to the largest anticipated data sets.
They are based on iterative conjugate gradient (CG) approaches enhanced with
novel, parallel, two-level preconditioners. We apply the proposed solvers to
examples of simulated non-polarised and polarised CMB observations, and a set
of idealised scanning strategies with sky coverage ranging from nearly a full
sky down to small sky patches. We discuss in detail their implementation for
massively parallel computational platforms and their performance for a broad
range of parameters characterising the simulated data sets. We find that our
best new solver can outperform carefully-optimised standard solvers used today
by a factor of as much as 5 in terms of the convergence rate and a factor of up
to in terms of the time to solution, and to do so without significantly
increasing the memory consumption and the volume of inter-processor
communication. The performance of the new algorithms is also found to be more
stable and robust, and less dependent on specific characteristics of the
analysed data set. We therefore conclude that the proposed approaches are well
suited to address successfully challenges posed by new and forthcoming CMB data
sets.Comment: 19 pages // Final version submitted to A&
A bibliography on parallel and vector numerical algorithms
This is a bibliography of numerical methods. It also includes a number of other references on machine architecture, programming language, and other topics of interest to scientific computing. Certain conference proceedings and anthologies which have been published in book form are listed also
Matrix-free GPU implementation of a preconditioned conjugate gradient solver for anisotropic elliptic PDEs
Many problems in geophysical and atmospheric modelling require the fast
solution of elliptic partial differential equations (PDEs) in "flat" three
dimensional geometries. In particular, an anisotropic elliptic PDE for the
pressure correction has to be solved at every time step in the dynamical core
of many numerical weather prediction models, and equations of a very similar
structure arise in global ocean models, subsurface flow simulations and gas and
oil reservoir modelling. The elliptic solve is often the bottleneck of the
forecast, and an algorithmically optimal method has to be used and implemented
efficiently. Graphics Processing Units have been shown to be highly efficient
for a wide range of applications in scientific computing, and recently
iterative solvers have been parallelised on these architectures. We describe
the GPU implementation and optimisation of a Preconditioned Conjugate Gradient
(PCG) algorithm for the solution of a three dimensional anisotropic elliptic
PDE for the pressure correction in NWP. Our implementation exploits the strong
vertical anisotropy of the elliptic operator in the construction of a suitable
preconditioner. As the algorithm is memory bound, performance can be improved
significantly by reducing the amount of global memory access. We achieve this
by using a matrix-free implementation which does not require explicit storage
of the matrix and instead recalculates the local stencil. Global memory access
can also be reduced by rewriting the algorithm using loop fusion and we show
that this further reduces the runtime on the GPU. We demonstrate the
performance of our matrix-free GPU code by comparing it to a sequential CPU
implementation and to a matrix-explicit GPU code which uses existing libraries.
The absolute performance of the algorithm for different problem sizes is
quantified in terms of floating point throughput and global memory bandwidth.Comment: 18 pages, 7 figure
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