1,995 research outputs found
High-Performance Cloud Computing: A View of Scientific Applications
Scientific computing often requires the availability of a massive number of
computers for performing large scale experiments. Traditionally, these needs
have been addressed by using high-performance computing solutions and installed
facilities such as clusters and super computers, which are difficult to setup,
maintain, and operate. Cloud computing provides scientists with a completely
new model of utilizing the computing infrastructure. Compute resources, storage
resources, as well as applications, can be dynamically provisioned (and
integrated within the existing infrastructure) on a pay per use basis. These
resources can be released when they are no more needed. Such services are often
offered within the context of a Service Level Agreement (SLA), which ensure the
desired Quality of Service (QoS). Aneka, an enterprise Cloud computing
solution, harnesses the power of compute resources by relying on private and
public Clouds and delivers to users the desired QoS. Its flexible and service
based infrastructure supports multiple programming paradigms that make Aneka
address a variety of different scenarios: from finance applications to
computational science. As examples of scientific computing in the Cloud, we
present a preliminary case study on using Aneka for the classification of gene
expression data and the execution of fMRI brain imaging workflow.Comment: 13 pages, 9 figures, conference pape
A Taxonomy of Workflow Management Systems for Grid Computing
With the advent of Grid and application technologies, scientists and
engineers are building more and more complex applications to manage and process
large data sets, and execute scientific experiments on distributed resources.
Such application scenarios require means for composing and executing complex
workflows. Therefore, many efforts have been made towards the development of
workflow management systems for Grid computing. In this paper, we propose a
taxonomy that characterizes and classifies various approaches for building and
executing workflows on Grids. We also survey several representative Grid
workflow systems developed by various projects world-wide to demonstrate the
comprehensiveness of the taxonomy. The taxonomy not only highlights the design
and engineering similarities and differences of state-of-the-art in Grid
workflow systems, but also identifies the areas that need further research.Comment: 29 pages, 15 figure
Heterogeneous hierarchical workflow composition
Workflow systems promise scientists an automated end-to-end path from hypothesis to discovery. However, expecting any single workflow system to deliver such a wide range of capabilities is impractical. A more practical solution is to compose the end-to-end workflow from more than one system. With this goal in mind, the integration of task-based and in situ workflows is explored, where the result is a hierarchical heterogeneous workflow composed of subworkflows, with different levels of the hierarchy using different programming, execution, and data models. Materials science use cases demonstrate the advantages of such heterogeneous hierarchical workflow composition.This work is a collaboration between Argonne National Laboratory and the Barcelona Supercomputing Center within the Joint Laboratory for Extreme-Scale Computing. This research is supported by the
U.S. Department of Energy, Office of Science, Office of Advanced Scientific Computing Research, under contract number DE-AC02-
06CH11357, program manager Laura Biven, and by the Spanish
Government (SEV2015-0493), by the Spanish Ministry of Science and Innovation (contract TIN2015-65316-P), by Generalitat de Catalunya (contract 2014-SGR-1051).Peer ReviewedPostprint (author's final draft
MPICH-G2: A Grid-Enabled Implementation of the Message Passing Interface
Application development for distributed computing "Grids" can benefit from
tools that variously hide or enable application-level management of critical
aspects of the heterogeneous environment. As part of an investigation of these
issues, we have developed MPICH-G2, a Grid-enabled implementation of the
Message Passing Interface (MPI) that allows a user to run MPI programs across
multiple computers, at the same or different sites, using the same commands
that would be used on a parallel computer. This library extends the Argonne
MPICH implementation of MPI to use services provided by the Globus Toolkit for
authentication, authorization, resource allocation, executable staging, and
I/O, as well as for process creation, monitoring, and control. Various
performance-critical operations, including startup and collective operations,
are configured to exploit network topology information. The library also
exploits MPI constructs for performance management; for example, the MPI
communicator construct is used for application-level discovery of, and
adaptation to, both network topology and network quality-of-service mechanisms.
We describe the MPICH-G2 design and implementation, present performance
results, and review application experiences, including record-setting
distributed simulations.Comment: 20 pages, 8 figure
Survey and Analysis of Production Distributed Computing Infrastructures
This report has two objectives. First, we describe a set of the production
distributed infrastructures currently available, so that the reader has a basic
understanding of them. This includes explaining why each infrastructure was
created and made available and how it has succeeded and failed. The set is not
complete, but we believe it is representative.
Second, we describe the infrastructures in terms of their use, which is a
combination of how they were designed to be used and how users have found ways
to use them. Applications are often designed and created with specific
infrastructures in mind, with both an appreciation of the existing capabilities
provided by those infrastructures and an anticipation of their future
capabilities. Here, the infrastructures we discuss were often designed and
created with specific applications in mind, or at least specific types of
applications. The reader should understand how the interplay between the
infrastructure providers and the users leads to such usages, which we call
usage modalities. These usage modalities are really abstractions that exist
between the infrastructures and the applications; they influence the
infrastructures by representing the applications, and they influence the ap-
plications by representing the infrastructures
Towards Loosely-Coupled Programming on Petascale Systems
We have extended the Falkon lightweight task execution framework to make
loosely coupled programming on petascale systems a practical and useful
programming model. This work studies and measures the performance factors
involved in applying this approach to enable the use of petascale systems by a
broader user community, and with greater ease. Our work enables the execution
of highly parallel computations composed of loosely coupled serial jobs with no
modifications to the respective applications. This approach allows a new-and
potentially far larger-class of applications to leverage petascale systems,
such as the IBM Blue Gene/P supercomputer. We present the challenges of I/O
performance encountered in making this model practical, and show results using
both microbenchmarks and real applications from two domains: economic energy
modeling and molecular dynamics. Our benchmarks show that we can scale up to
160K processor-cores with high efficiency, and can achieve sustained execution
rates of thousands of tasks per second.Comment: IEEE/ACM International Conference for High Performance Computing,
Networking, Storage and Analysis (SuperComputing/SC) 200
Global Grids and Software Toolkits: A Study of Four Grid Middleware Technologies
Grid is an infrastructure that involves the integrated and collaborative use
of computers, networks, databases and scientific instruments owned and managed
by multiple organizations. Grid applications often involve large amounts of
data and/or computing resources that require secure resource sharing across
organizational boundaries. This makes Grid application management and
deployment a complex undertaking. Grid middlewares provide users with seamless
computing ability and uniform access to resources in the heterogeneous Grid
environment. Several software toolkits and systems have been developed, most of
which are results of academic research projects, all over the world. This
chapter will focus on four of these middlewares--UNICORE, Globus, Legion and
Gridbus. It also presents our implementation of a resource broker for UNICORE
as this functionality was not supported in it. A comparison of these systems on
the basis of the architecture, implementation model and several other features
is included.Comment: 19 pages, 10 figure
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