The Hosting Environment of the Advanced Resource Connector middleware

The central component of AR

Heterogeneous Relational Databases for a Grid-enabled Analysis Environment

Grid based systems require a database access mechanism that can provide seamless homogeneous access to the requested data through a virtual data access system, i.e. a system which can take care of tracking the data that is stored in geographically distributed heterogeneous databases. This system should provide an integrated view of the data that is stored in the different repositories by using a virtual data access mechanism, i.e. a mechanism which can hide the heterogeneity of the backend databases from the client applications. This paper focuses on accessing data stored in disparate relational databases through a web service interface, and exploits the features of a Data Warehouse and Data Marts. We present a middleware that enables applications to access data stored in geographically distributed relational databases without being aware of their physical locations and underlying schema. A web service interface is provided to enable applications to access this middleware in a language and platform independent way. A prototype implementation was created based on Clarens [4], Unity [7] and POOL [8]. This ability to access the data stored in the distributed relational databases transparently is likely to be a very powerful one for Grid users, especially the scientific community wishing to collate and analyze data distributed over the Grid

A schema-based P2P network to enable publish-subscribe for multimedia content in open hypermedia systems

Open Hypermedia Systems (OHS) aim to provide efficient dissemination, adaptation and integration of hyperlinked multimedia resources. Content available in Peer-to-Peer (P2P) networks could add significant value to OHS provided that challenges for efficient discovery and prompt delivery of rich and up-to-date content are successfully addressed. This paper proposes an architecture that enables the operation of OHS over a P2P overlay network of OHS servers based on semantic annotation of (a) peer OHS servers and of (b) multimedia resources that can be obtained through the link services of the OHS. The architecture provides efficient resource discovery. Semantic query-based subscriptions over this P2P network can enable access to up-to-date content, while caching at certain peers enables prompt delivery of multimedia content. Advanced query resolution techniques are employed to match different parts of subscription queries (subqueries). These subscriptions can be shared among different interested peers, thus increasing the efficiency of multimedia content dissemination

XML in Motion from Genome to Drug

Information technology (IT) has emerged as a central to the solution of contemporary genomics and drug discovery problems. Researchers involved in genomics, proteomics, transcriptional profiling, high throughput structure determination, and in other sub-disciplines of bioinformatics have direct impact on this IT revolution. As the full genome sequences of many species, data from structural genomics, micro-arrays, and proteomics became available, integration of these data to a common platform require sophisticated bioinformatics tools. Organizing these data into knowledgeable databases and developing appropriate software tools for analyzing the same are going to be major challenges. XML (eXtensible Markup Language) forms the backbone of biological data representation and exchange over the internet, enabling researchers to aggregate data from various heterogeneous data resources. The present article covers a comprehensive idea of the integration of XML on particular type of biological databases mainly dealing with sequence-structure-function relationship and its application towards drug discovery. This e-medical science approach should be applied to other scientific domains and the latest trend in semantic web applications is also highlighted

Big Data Guided Resources Businesses – Leveraging Location Analytics and Managing Geospatial-temporal Knowledge

Location data rapidly grow with fast-changing logistics and business rules. Due to fast-growing business ventures and their diverse operations locally and globally, location-based information systems are in demand in resource industries. Data sources in these industries are spatial-temporal, with petabytes in size. Managing volumes and various data in periodic and geographic dimensions using the existing modelling methods is challenging. The current relational database models have implementation challenges, including the interpretation of data views. Multidimensional models are articulated to integrate resource databases with spatial-temporal attribute dimensions. Location and periodic attribute dimensions are incorporated into various schemas to minimise ambiguity during database operations, ensuring resource data's uniqueness and monotonic characteristics. We develop an integrated framework compatible with the multidimensional repository and implement its metadata in resource industries. The resources’ metadata with spatial-temporal attributes enables business research analysts a scope for data views’ interpretation in new geospatial knowledge domains for financial decision support

Middleware-based Database Replication: The Gaps between Theory and Practice

The need for high availability and performance in data management systems has been fueling a long running interest in database replication from both academia and industry. However, academic groups often attack replication problems in isolation, overlooking the need for completeness in their solutions, while commercial teams take a holistic approach that often misses opportunities for fundamental innovation. This has created over time a gap between academic research and industrial practice. This paper aims to characterize the gap along three axes: performance, availability, and administration. We build on our own experience developing and deploying replication systems in commercial and academic settings, as well as on a large body of prior related work. We sift through representative examples from the last decade of open-source, academic, and commercial database replication systems and combine this material with case studies from real systems deployed at Fortune 500 customers. We propose two agendas, one for academic research and one for industrial R&D, which we believe can bridge the gap within 5-10 years. This way, we hope to both motivate and help researchers in making the theory and practice of middleware-based database replication more relevant to each other.Comment: 14 pages. Appears in Proc. ACM SIGMOD International Conference on Management of Data, Vancouver, Canada, June 200

eBank UK: linking research data, scholarly communication and learning

This paper includes an overview of the changing landscape of scholarly communication and describes outcomes from the innovative eBank UK project, which seeks to build links from e-research through to e-learning. As introduction, the scholarly knowledge cycle is described and the role of digital repositories and aggregator services in linking data-sets from Grid-enabled projects to e-prints through to peer-reviewed articles as resources in portals and Learning Management Systems, are assessed. The development outcomes from the eBank UK project are presented including the distributed information architecture, requirements for common ontologies, data models, metadata schema, open linking technologies, provenance and workflows. Some emerging challenges for the future are presented in conclusion

Stellaris: An RDF-based Information Service for AstroGrid-D

We present Stellaris, the information service of the community project AstroGrid-D. Stellaris is the core component of the AstroGrid-D middleware that enables scientists to share their resources, provides access to large datasets and integrates instruments such as robotic telescopes. Besides the many diverse types of resources, the information service also supports a wide range of use cases each using a specific schema for the metadata. In addition, Stellaris addresses the distributed and dynamic nature of collaborations in the astronomers’ community. Stellaris satisfies these requirements by adopting RDF and SPARQL for storing and querying metadata. Our paper focuses on the requirements of the community, presents the architecture of the information service in detail and discusses experiences with the prototype already in use by partners within the project