Asymmetric Lee Distance Codes for DNA-Based Storage

We consider a new family of codes, termed asymmetric Lee distance codes, that arise in the design and implementation of DNA-based storage systems and systems with parallel string transmission protocols. The codewords are defined over a quaternary alphabet, although the results carry over to other alphabet sizes; furthermore, symbol confusability is dictated by their underlying binary representation. Our contributions are two-fold. First, we demonstrate that the new distance represents a linear combination of the Lee and Hamming distance and derive upper bounds on the size of the codes under this metric based on linear programming techniques. Second, we propose a number of code constructions which imply lower bounds

Interleaving schemes for multidimensional cluster errors

We present two-dimensional and three-dimensional interleaving techniques for correcting two- and three-dimensional bursts (or clusters) of errors, where a cluster of errors is characterized by its area or volume. Correction of multidimensional error clusters is required in holographic storage, an emerging application of considerable importance. Our main contribution is the construction of efficient two-dimensional and three-dimensional interleaving schemes. The proposed schemes are based on t-interleaved arrays of integers, defined by the property that every connected component of area or volume t consists of distinct integers. In the two-dimensional case, our constructions are optimal: they have the lowest possible interleaving degree. That is, the resulting t-interleaved arrays contain the smallest possible number of distinct integers, hence minimizing the number of codewords required in an interleaving scheme. In general, we observe that the interleaving problem can be interpreted as a graph-coloring problem, and introduce the useful special class of lattice interleavers. We employ a result of Minkowski, dating back to 1904, to establish both upper and lower bounds on the interleaving degree of lattice interleavers in three dimensions. For the case t≡0 mod 6, the upper and lower bounds coincide, and the Minkowski lattice directly yields an optimal lattice interleaver. For t≠0 mod 6, we construct efficient lattice interleavers using approximations of the Minkowski lattice

Asymptotic probability bounds on the peak distribution of complex multicarrier signals without Gaussian assumption

Multicarrier signals exhibit a large peak to mean envelope power ratio (PMEPR). In this paper, we derive the lower and upper probability bounds for the PMEPR distribution when entries of the codeword, C, are chosen independently from a symmetric q-ary PSK or QAM constellation, C /spl isin/ /spl Qscr/;/sup nq/, or C is chosen from a complex n dimensional sphere, /spl Omega//sup n/ when the number of subcarriers, n, is large and without any Gaussian assumption on either the joint distribution or any sample of the multicarrier signal. Even though the worst case PMEPR is of the order of n, the main result is that the PMEPR of a random codeword C chosen from /spl Qscr/;/sup nq/ or /spl Omega//sup n/ is log n with probability one, asymptotically. A Varsharmov-Gilbert (VG) style bound for the achievable rate and minimum Hamming distance of codes chosen from /spl Qscr/;/sup nq/, with PMEPR of less than log n is obtained. It is proved that asymptotically, the VG bound remains the same for the codes chosen from /spl Qscr/;/sup nq/ with PMEPR of less than log n

Locally Testable Codes and Cayley Graphs

We give two new characterizations of (\F_2-linear) locally testable error-correcting codes in terms of Cayley graphs over \F_2^h: \begin{enumerate} \item A locally testable code is equivalent to a Cayley graph over \F_2^h whose set of generators is significantly larger than $h$ and has no short linear dependencies, but yields a shortest-path metric that embeds into $\ell_1$ with constant distortion. This extends and gives a converse to a result of Khot and Naor (2006), which showed that codes with large dual distance imply Cayley graphs that have no low-distortion embeddings into $\ell_1$. \item A locally testable code is equivalent to a Cayley graph over \F_2^h that has significantly more than $h$ eigenvalues near 1, which have no short linear dependencies among them and which "explain" all of the large eigenvalues. This extends and gives a converse to a recent construction of Barak et al. (2012), which showed that locally testable codes imply Cayley graphs that are small-set expanders but have many large eigenvalues. \end{enumerate}Comment: 22 page

Codes for Asymmetric Limited-Magnitude Errors With Application to Multilevel Flash Memories

Several physical effects that limit the reliability and performance of multilevel flash memories induce errors that have low magnitudes and are dominantly asymmetric. This paper studies block codes for asymmetric limited-magnitude errors over q-ary channels. We propose code constructions and bounds for such channels when the number of errors is bounded by t and the error magnitudes are bounded by ℓ. The constructions utilize known codes for symmetric errors, over small alphabets, to protect large-alphabet symbols from asymmetric limited-magnitude errors. The encoding and decoding of these codes are performed over the small alphabet whose size depends only on the maximum error magnitude and is independent of the alphabet size of the outer code. Moreover, the size of the codes is shown to exceed the sizes of known codes (for related error models), and asymptotic rate-optimality results are proved. Extensions of the construction are proposed to accommodate variations on the error model and to include systematic codes as a benefit to practical implementation