Frequency-splitting Dynamic MRI Reconstruction using Multi-scale 3D Convolutional Sparse Coding and Automatic Parameter Selection

Department of Computer Science and EngineeringIn this thesis, we propose a novel image reconstruction algorithm using multi-scale 3D con- volutional sparse coding and a spectral decomposition technique for highly undersampled dy- namic Magnetic Resonance Imaging (MRI) data. The proposed method recovers high-frequency information using a shared 3D convolution-based dictionary built progressively during the re- construction process in an unsupervised manner, while low-frequency information is recovered using a total variation-based energy minimization method that leverages temporal coherence in dynamic MRI. Additionally, the proposed 3D dictionary is built across three different scales to more efficiently adapt to various feature sizes, and elastic net regularization is employed to promote a better approximation to the sparse input data. Furthermore, the computational com- plexity of each component in our iterative method is analyzed. We also propose an automatic parameter selection technique based on a genetic algorithm to find optimal parameters for our numerical solver which is a variant of the alternating direction method of multipliers (ADMM). We demonstrate the performance of our method by comparing it with state-of-the-art methods on 15 single-coil cardiac, 7 single-coil DCE, and a multi-coil brain MRI datasets at different sampling rates (12.5%, 25% and 50%). The results show that our method significantly outper- forms the other state-of-the-art methods in reconstruction quality with a comparable running time and is resilient to noise.ope

Stable, Robust and Super Fast Reconstruction of Tensors Using Multi-Way Projections

In the framework of multidimensional Compressed Sensing (CS), we introduce an analytical reconstruction formula that allows one to recover an $N$th-order $(I_1\times I_2\times \cdots \times I_N)$ data tensor $\underline{\mathbf{X}}$ from a reduced set of multi-way compressive measurements by exploiting its low multilinear-rank structure. Moreover, we show that, an interesting property of multi-way measurements allows us to build the reconstruction based on compressive linear measurements taken only in two selected modes, independently of the tensor order $N$. In addition, it is proved that, in the matrix case and in a particular case with $3$rd-order tensors where the same 2D sensor operator is applied to all mode-3 slices, the proposed reconstruction $\underline{\mathbf{X}}_\tau$ is stable in the sense that the approximation error is comparable to the one provided by the best low-multilinear-rank approximation, where $\tau$ is a threshold parameter that controls the approximation error. Through the analysis of the upper bound of the approximation error we show that, in the 2D case, an optimal value for the threshold parameter $\tau=\tau_0 > 0$ exists, which is confirmed by our simulation results. On the other hand, our experiments on 3D datasets show that very good reconstructions are obtained using $\tau=0$, which means that this parameter does not need to be tuned. Our extensive simulation results demonstrate the stability and robustness of the method when it is applied to real-world 2D and 3D signals. A comparison with state-of-the-arts sparsity based CS methods specialized for multidimensional signals is also included. A very attractive characteristic of the proposed method is that it provides a direct computation, i.e. it is non-iterative in contrast to all existing sparsity based CS algorithms, thus providing super fast computations, even for large datasets.Comment: Submitted to IEEE Transactions on Signal Processin

Robust Algorithms for Low-Rank and Sparse Matrix Models

Data in statistical signal processing problems is often inherently matrix-valued, and a natural first step in working with such data is to impose a model with structure that captures the distinctive features of the underlying data. Under the right model, one can design algorithms that can reliably tease weak signals out of highly corrupted data. In this thesis, we study two important classes of matrix structure: low-rankness and sparsity. In particular, we focus on robust principal component analysis (PCA) models that decompose data into the sum of low-rank and sparse (in an appropriate sense) components. Robust PCA models are popular because they are useful models for data in practice and because efficient algorithms exist for solving them. This thesis focuses on developing new robust PCA algorithms that advance the state-of-the-art in several key respects. First, we develop a theoretical understanding of the effect of outliers on PCA and the extent to which one can reliably reject outliers from corrupted data using thresholding schemes. We apply these insights and other recent results from low-rank matrix estimation to design robust PCA algorithms with improved low-rank models that are well-suited for processing highly corrupted data. On the sparse modeling front, we use sparse signal models like spatial continuity and dictionary learning to develop new methods with important adaptive representational capabilities. We also propose efficient algorithms for implementing our methods, including an extension of our dictionary learning algorithms to the online or sequential data setting. The underlying theme of our work is to combine ideas from low-rank and sparse modeling in novel ways to design robust algorithms that produce accurate reconstructions from highly undersampled or corrupted data. We consider a variety of application domains for our methods, including foreground-background separation, photometric stereo, and inverse problems such as video inpainting and dynamic magnetic resonance imaging.PHDElectrical Engineering: SystemsUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttps://deepblue.lib.umich.edu/bitstream/2027.42/143925/1/brimoor_1.pd