Practice of streaming processing of dynamic graphs: concepts, models, and systems

http://arxiv.org/abs/1912.12740Published versio

A network transparent, retained mode multimedia processing framework for the Linux operating system environment

Die Arbeit präsentiert ein Multimedia-Framework für Linux, das im Unterschied zu früheren Arbeiten auf den Ideen "retained-mode processing" und "lazy evaluation" basiert: Statt Transformationen unmittelbar auszuführen, wird eine abstrakte Repräsentation aller Medienelemente aufgebaut. "renderer"-Treiber fungieren als Übersetzer, die diese Darstellung zur Laufzeit in konkrete Operationen umsetzen, wobei das Datenmodell zahlreiche Optimierungen zur Reduktion der Anzahl der Schritte oder der Minimierung von Kommunikation erlaubt. Dies erlaubt ein stark vereinfachtes Programmiermodell bei gleichzeitiger Effizienzsteigerung. "renderer"-Treiber können zur Ausführung von Transformationen den lokalen Prozessor verwenden, oder können die Operationen delegieren. In der Arbeit wird eine Erweiterung des X Window Systems um Mechanismen zur Medienverarbeitung vorgestellt, sowie ein "renderer"-Treiber, der diese zur Delegation der Verarbeitung nutzt

Preparing sparse solvers for exascale computing.

Sparse solvers provide essential functionality for a wide variety of scientific applications. Highly parallel sparse solvers are essential for continuing advances in high-fidelity, multi-physics and multi-scale simulations, especially as we target exascale platforms. This paper describes the challenges, strategies and progress of the US Department of Energy Exascale Computing project towards providing sparse solvers for exascale computing platforms. We address the demands of systems with thousands of high-performance node devices where exposing concurrency, hiding latency and creating alternative algorithms become essential. The efforts described here are works in progress, highlighting current success and upcoming challenges. This article is part of a discussion meeting issue 'Numerical algorithms for high-performance computational science'

Design Space Exploration of Accelerators for Warehouse Scale Computing

With Moore’s law grinding to a halt, accelerators are one of the ways that new silicon can improve performance, and they are already a key component in modern datacenters. Accelerators are integrated circuits that implement parts of an application with the objective of higher energy efficiency compared to execution on a standard general purpose CPU. Many accelerators can target any particular workload, generally with a wide range of performance, and costs such as area or power. Exploring these design choices, called Design Space Exploration (DSE), is a crucial step in trying to find the most efficient accelerator design, the one that produces the largest reduction of the total cost of ownership. This work aims to improve this design space exploration phase for accelerators and to avoid pitfalls in the process. This dissertation supports the thesis that early design choices – including the level of specialization – are critical for accelerator development and therefore require benchmarks reflective of production workloads. We present three studies that support this thesis. First, we show how to benchmark datacenter applications by creating a benchmark for large video sharing infrastructures. Then, we present two studies focused on accelerators for analytical query processing. The first is an analysis on the impact of Network on Chip specialization while the second analyses the impact of the level of specialization. The first part of this dissertation introduces vbench: a video transcoding benchmark tailored to the growing video-as-a-service market. Video transcoding is not accurately represented in current computer architecture benchmarks such as SPEC or PARSEC. Despite posing a big computational burden for cloud video providers, such as YouTube and Facebook, it is not included in cloud benchmarks such as CloudSuite. Using vbench, we found that the microarchitectural profile of video transcoding is highly dependent on the input video, that SIMD extensions provide limited benefits, and that commercial hardware transcoders impose tradeoffs that are not ideal for cloud video providers. Our benchmark should spur architectural innovations for this critical workload. This work shows how to benchmark a real world warehouse scale application and the possible pitfalls in case of a mischaracterization. When considering accelerators for the different, but no less important, application of analytical query processing, design space exploration plays a critical role. We analyzed the Q100, a class of accelerators for this application domain, using TPC-H as the reference benchmark. We found that the hardware computational blocks have to be tailored to the requirements of the application, but also the Network on Chip (NoC) can be specialized. We developed an algorithm capable of producing more effective Q100 designs by tailoring the NoC to the communication requirements of the system. Our algorithm is capable of producing designs that are Pareto optimal compared to standard NoC topologies. This shows how NoC specialization is highly effective for accelerators and it should be an integral part of design space exploration for large accelerators’ designs. The third part of this dissertation analyzes the impact of the level of specialization, e.g. using an ASIC or Coarse Grain Reconfigurable Architecture (CGRA) implementation, on an accelerator performance. We developed a CGRA architecture capable of executing SQL query plans. We compare this architecture against Q100, an ASIC that targets the same class of workloads. Despite being less specialized, this programmable architecture shows comparable performance to the Q100 given an area and power budget. Resource usage explains this counterintuitive result, since a well programmed, homogeneous array of resources is able to more effectively harness silicon for the workload at hand. This suggests that a balanced accelerator research portfolio must include alternative programmable architectures – and their software stacks

High Performance Computing for DNA Sequence Alignment and Assembly

Recent advances in DNA sequencing technology have dramatically increased the scale and scope of DNA sequencing. These data are used for a wide variety of important biological analyzes, including genome sequencing, comparative genomics, transcriptome analysis, and personalized medicine but are complicated by the volume and complexity of the data involved. Given the massive size of these datasets, computational biology must draw on the advances of high performance computing. Two fundamental computations in computational biology are read alignment and genome assembly. Read alignment maps short DNA sequences to a reference genome to discover conserved and polymorphic regions of the genome. Genome assembly computes the sequence of a genome from many short DNA sequences. Both computations benefit from recent advances in high performance computing to efficiently process the huge datasets involved, including using highly parallel graphics processing units (GPUs) as high performance desktop processors, and using the MapReduce framework coupled with cloud computing to parallelize computation to large compute grids. This dissertation demonstrates how these technologies can be used to accelerate these computations by orders of magnitude, and have the potential to make otherwise infeasible computations practical

Analysis domain model for shared virtual environments

The field of shared virtual environments, which also encompasses online games and social 3D environments, has a system landscape consisting of multiple solutions that share great functional overlap. However, there is little system interoperability between the different solutions. A shared virtual environment has an associated problem domain that is highly complex raising difficult challenges to the development process, starting with the architectural design of the underlying system. This paper has two main contributions. The first contribution is a broad domain analysis of shared virtual environments, which enables developers to have a better understanding of the whole rather than the part(s). The second contribution is a reference domain model for discussing and describing solutions - the Analysis Domain Model