The Effect of Different Forms of Synaptic Plasticity on Pattern Recognition in the Cerebellar Cortex

“The original publication is available at www.springerlink.com”. Copyright Springer.Many cerebellar learning theories assume that long-term depression (LTD) of synapses between parallel fibres (PFs) and Purkinje cells (PCs) provides the basis for pattern recognition in the cerebellum. Previous work has suggested that PCs can use a novel neural code based on the duration of silent periods. These simulations have used a simplified learning rule, where the synaptic conductance was halved each time a pattern was learned. However, experimental studies in cerebellar slices show that the synaptic conductance saturates and is rarely reduced to less than 50% of its baseline value. Moreover, the previous simulations did not include plasticity of the synapses between inhibitory interneurons and PCs. Here we study the effect of LTD saturation and inhibitory synaptic plasticity on pattern recognition in a complex PC model. We find that the PC model is very sensitive to the value at which LTD saturates, but is unaffected by inhibitory synaptic plasticity.Peer reviewe

Computational models of intracellular signalling in cerebellar Purkinje cells

In spite of the regular and well-characterised anatomy of the cerebellum, its function is still not clear. To understand the function of the cerebellum, it is necessary to understand the behaviour of a single cerebellar Purkinje cell. The behaviour of Purkinje cells is determined by their intracellular calcium dynamics, and by the network of intracellular signalling molecules that control the calcium dynamics. The aim of this thesis is to contribute to an understanding of the intracellular signalling network that is linked to the activation of metabotropic glutamate receptors (mGluRs) in a cerebellar Purkinje cell. In the thesis, ten different computational models of the mGluR signalling network are mathematically analysed and numerically integrated. The main result of this thesis is that the mGluR signalling network can implement an adaptive time delay between the activation of the mGluRs by glutamate and the release of calcium from intracellular stores. The adaptation of the time de..

Nonspecific synaptic plasticity improves the recognition of sparse patterns degraded by local noise

Safaryan, K. et al. Nonspecific synaptic plasticity improves the recognition of sparse patterns degraded by local noise. Sci. Rep. 7, 46550; doi: 10.1038/srep46550 (2017). This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ © The Author(s) 2017.Many forms of synaptic plasticity require the local production of volatile or rapidly diffusing substances such as nitric oxide. The nonspecific plasticity these neuromodulators may induce at neighboring non-active synapses is thought to be detrimental for the specificity of memory storage. We show here that memory retrieval may benefit from this non-specific plasticity when the applied sparse binary input patterns are degraded by local noise. Simulations of a biophysically realistic model of a cerebellar Purkinje cell in a pattern recognition task show that, in the absence of noise, leakage of plasticity to adjacent synapses degrades the recognition of sparse static patterns. However, above a local noise level of 20 %, the model with nonspecific plasticity outperforms the standard, specific model. The gain in performance is greatest when the spatial distribution of noise in the input matches the range of diffusion-induced plasticity. Hence non-specific plasticity may offer a benefit in noisy environments or when the pressure to generalize is strong.Peer reviewe

Dendritic spikes control synaptic plasticity and somatic output in cerebellar Purkinje cells.

Neurons receive the vast majority of their input onto their dendrites. Dendrites express a plethora of voltage-gated channels. Regenerative, local events in dendrites and their role in the information transformation in single neurons are, however, poorly understood. This thesis investigates the basic properties and functional roles of dendritic spikes in cerebellar Purkinje cells using whole-cell patch clamp recordings from the dendrites and soma of rat Purkinje cells in brain slices. I show that parallel fibre (PF) evoked dendritic spikes are mediated by calcium channels, depend on membrane potential and stimulus intensity and are highly localized to the spiny branches receiving the synaptic input. A determining factor in the localization and spread of dendritic calcium spikes is the activation of large-conductance, calcium dependent potassium (BK) channels. I provide a strong link between dendritic spikes and the endocannabinoid dependent short-term synaptic plasticity, depolarization-induced suppression of excitation (DSE). Gating the dendritic spikes using stimulus intensity or membrane potential, I show that the threshold of DSE is identical to that of the dendritic spikes and the extent of DSE depends on the number of dendritic spikes. Blocking BK channels increases the spatial spread of dendritic spikes and enables current injection or climbing fibre (CF) evoked dendritic spikes to suppress PF inputs via DSE. By monitoring dendritic spikes during strong PF stimulation-induced long-term depression (LTD), I also provide a link between long-term synaptic plasticity and dendritic excitability. By showing that blocking CB1 cannabinoid receptors reduces the intensity requirement for LTD, I provide a connection between the short- and long-term changes in PF strength triggered by dendritic spikes I also investigate the effect dendritic spikes have on somatic action potential output. Contrary to pyramidal cells, where dendritic spikes boost the output of the neuron, the average Purkinje cell output becomes independent from the output strength for inputs triggering dendritic spikes. However, the temporal pattern of the output is strongly affected by dendritic spikes. I show that this phenomenon depends on BK channel activation resulting in a pause in somatic firing following dendritic spikes. In summary, I present a description of PF evoked local dendritic spikes and demonstrate their functional role in controlling the synaptic input and action potential output of cerebellar Purkinje cells

Climbing Fibers Provide Graded Error Signals in Cerebellar Learning

The cerebellum plays a critical role in coordinating and learning complex movements. Although its importance has been well recognized, the mechanisms of learning remain hotly debated. According to the classical cerebellar learning theory, depression of parallel fiber synapses instructed by error signals from climbing fibers, drives cerebellar learning. The uniqueness of long-term depression (LTD) in cerebellar learning has been challenged by evidence showing multi-site synaptic plasticity. In Purkinje cells, long-term potentiation (LTP) of parallel fiber synapses is now well established and it can be achieved with or without climbing fiber signals, making the role of climbing fiber input more puzzling. The central question is how individual Purkinje cells extract global errors based on climbing fiber input. Previous data seemed to demonstrate that climbing fibers are inefficient instructors, because they were thought to carry “binary” error signals to individual Purkinje cells, which significantly constrains the efficiency of cerebellar learning in several regards. In recent years, new evidence has challenged the traditional view of “binary” climbing fiber responses, suggesting that climbing fibers can provide graded information to efficiently instruct individual Purkinje cells to learn. Here we review recent experimental and theoretical progress regarding modulated climbing fiber responses in Purkinje cells. Analog error signals are generated by the interaction of varying climbing fibers inputs with simultaneous other synaptic input and with firing states of targeted Purkinje cells. Accordingly, the calcium signals which trigger synaptic plasticity can be graded in both amplitude and spatial range to affect the learning rate and even learning direction. We briefly discuss how these new findings complement the learning theory and help to further our understanding of how the cerebellum works

Modeling the Cerebellar Microcircuit: New Strategies for a Long-Standing Issue

The cerebellar microcircuit has been the work bench for theoretical and computational modeling since the beginning of neuroscientific research. The regular neural architecture of the cerebellum inspired different solutions to the long-standing issue of how its circuitry could control motor learning and coordination. Originally, the cerebellar network was modeled using a statistical-topological approach that was later extended by considering the geometrical organization of local microcircuits. However, with the advancement in anatomical and physiological investigations, new discoveries have revealed an unexpected richness of connections, neuronal dynamics and plasticity, calling for a change in modeling strategies, so as to include the multitude of elementary aspects of the network into an integrated and easily updatable computational framework. Recently, biophysically accurate realistic models using a bottom-up strategy accounted for both detailed connectivity and neuronal non-linear membrane dynamics. In this perspective review, we will consider the state of the art and discuss how these initial efforts could be further improved. Moreover, we will consider how embodied neurorobotic models including spiking cerebellar networks could help explaining the role and interplay of distributed forms of plasticity. We envisage that realistic modeling, combined with closed-loop simulations, will help to capture the essence of cerebellar computations and could eventually be applied to neurological diseases and neurorobotic control systems

Recent data on the cerebellum require new models and theories

The cerebellum has been a popular topic for theoretical studies because its structure was thought to be simple. Since David Marr and James Albus related its function to motor skill learning and proposed the Marr-Albus cerebellar learning model, this theory has guided and inspired cerebellar research. In this review, we summarize the theoretical progress that has been made within this framework of error-based supervised learning. We discuss the experimental progress that demonstrates more complicated molecular and cellular mechanisms in the cerebellum as well as new cell types and recurrent connections. We also cover its involvement in diverse non-motor functions and evidence of other forms of learning. Finally, we highlight the need to explain these new experimental findings into an integrated cerebellar model that can unify its diverse computational functions.journal articl

Biophysics of Purkinje computation

Although others have reported and characterised different patterns of Purkinje firing (Womack and Khodakhah, 2002, 2003, 2004; McKay and Turner, 2005) this thesis is the first study that moves beyond their description and investigates the actual basis of their generation. Purkinje cells can intrinsically fire action potentials in a repeating trimodal or bimodal pattern. The trimodal pattern consists of tonic spiking, bursting and quiescence. The bimodal pattern consists of tonic spiking and quiescence. How these firing patterns are generated, and what ascertains which firing pattern is selected, has not been determined to date. We have constructed a detailed biophysical Purkinje cell model that can replicate these patterns and which shows that Na+/K+ pump activity sets the model’s operating mode. We propose that Na+/K+ pump modulation switches the Purkinje cell between different firing modes in a physiological setting and so innovatively hypothesise the Na+/K+ pump to be a computational element in Purkinje information coding. We present supporting in vitro Purkinje cell recordings in the presence of ouabain, which irreversibly blocks the Na+/K+ pump. Climbing fiber (CF) input has been shown experimentally to toggle a Purkinje cell between an up (firing) and down (quiescent) state and set the gain of its response to parallel fiber (PF) input (Mckay et al., 2007). Our Purkinje cell model captures these toggle and gain computations with a novel intracellular calcium computation that we hypothesise to be applicable in real Purkinje cells. So notably, our Purkinje cell model can compute, and importantly, relates biophysics to biological information processing. Our Purkinje cell model is biophysically detailed and as a result is very computationally intensive. This means that, whilst it is appropriate for studying properties of the 8 individual Purkinje cell (e.g. relating channel densities to firing properties), it is unsuitable for incorporation into network simulations. We have overcome this by deploying mathematical transforms to produce a simpler, surrogate version of our model that has the same electrical properties, but a lower computational overhead. Our hope is that this model, of intermediate biological fidelity and medium computational complexity, will be used in the future to bridge cellular and network studies and identify how distinctive Purkinje behaviours are important to network and system function

Proceedings of Abstracts Engineering and Computer Science Research Conference 2019

© 2019 The Author(s). This is an open-access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. For further details please see https://creativecommons.org/licenses/by/4.0/. Note: Keynote: Fluorescence visualisation to evaluate effectiveness of personal protective equipment for infection control is © 2019 Crown copyright and so is licensed under the Open Government Licence v3.0. Under this licence users are permitted to copy, publish, distribute and transmit the Information; adapt the Information; exploit the Information commercially and non-commercially for example, by combining it with other Information, or by including it in your own product or application. Where you do any of the above you must acknowledge the source of the Information in your product or application by including or linking to any attribution statement specified by the Information Provider(s) and, where possible, provide a link to this licence: http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/This book is the record of abstracts submitted and accepted for presentation at the Inaugural Engineering and Computer Science Research Conference held 17th April 2019 at the University of Hertfordshire, Hatfield, UK. This conference is a local event aiming at bringing together the research students, staff and eminent external guests to celebrate Engineering and Computer Science Research at the University of Hertfordshire. The ECS Research Conference aims to showcase the broad landscape of research taking place in the School of Engineering and Computer Science. The 2019 conference was articulated around three topical cross-disciplinary themes: Make and Preserve the Future; Connect the People and Cities; and Protect and Care

New tools and specification languages for biophysically detailed neuronal network modelling

Increasingly detailed data are being gathered on the molecular, electrical and anatomical properties of neuronal systems both in vitro and in vivo. These range from the kinetic properties and distribution of ion channels, synaptic plasticity mechanisms, electrical activity in neurons, and detailed anatomical connectivity within neuronal microcircuits from connectomics data. Publications describing these experimental results often set them in the context of higher level network behaviour. Biophysically detailed computational modelling provides a framework for consolidating these data, for quantifying the assumptions about underlying biological mechanisms, and for ensuring consistency in the explanation of the phenomena across scales. Such multiscale biophysically detailed models are not currently in wide- spread use by the experimental neuroscience community however. Reasons for this include the relative inaccessibility of software for creating these models, the range of specialised scripting languages used by the available simulators, and the difficulty in creating and managing large scale network simulations. This thesis describes new solutions to facilitate the creation, simulation, analysis and reuse of biophysically detailed neuronal models. The graphical application neuroConstruct allows detailed cell and network models to be built in 3D, and run on multiple simulation platforms without detailed programming knowledge. NeuroML is a simulator independent language for describing models containing detailed neuronal morphologies, ion channels, synapses, and 3D network connectivity. New solutions have also been developed for creating and analysing network models at much closer to biological scale on high performance computing platforms. A number of detailed neocortical, cerebellar and hippocampal models have been converted for use with these tools. The tools and models I have developed have already started to be used for original scientific research. It is hoped that this work will lead to a more solid foundation for creating, validating, simulating and sharing ever more realistic models of neurons and networks