Long geodesics in subgraphs of the cube

A path in the hypercube $Q_n$ is said to be a geodesic if no two of its edges are in the same direction. Let $G$ be a subgraph of $Q_n$ with average degree $d$. How long a geodesic must $G$ contain? We show that $G$ must contain a geodesic of length $d$. This result, which is best possible, strengthens a theorem of Feder and Subi. It is also related to the `antipodal colourings' conjecture of Norine.Comment: 8 page

Polyhedral computational geometry for averaging metric phylogenetic trees

This paper investigates the computational geometry relevant to calculations of the Frechet mean and variance for probability distributions on the phylogenetic tree space of Billera, Holmes and Vogtmann, using the theory of probability measures on spaces of nonpositive curvature developed by Sturm. We show that the combinatorics of geodesics with a specified fixed endpoint in tree space are determined by the location of the varying endpoint in a certain polyhedral subdivision of tree space. The variance function associated to a finite subset of tree space has a fixed $C^\infty$ algebraic formula within each cell of the corresponding subdivision, and is continuously differentiable in the interior of each orthant of tree space. We use this subdivision to establish two iterative methods for producing sequences that converge to the Frechet mean: one based on Sturm's Law of Large Numbers, and another based on descent algorithms for finding optima of smooth functions on convex polyhedra. We present properties and biological applications of Frechet means and extend our main results to more general globally nonpositively curved spaces composed of Euclidean orthants.Comment: 43 pages, 6 figures; v2: fixed typos, shortened Sections 1 and 5, added counter example for polyhedrality of vistal subdivision in general CAT(0) cubical complexes; v1: 43 pages, 5 figure

The simplicial boundary of a CAT(0) cube complex

For a CAT(0) cube complex $\mathbf X$, we define a simplicial flag complex $\partial_\Delta\mathbf X$, called the \emph{simplicial boundary}, which is a natural setting for studying non-hyperbolic behavior of $\mathbf X$. We compare $\partial_\Delta\mathbf X$ to the Roller, visual, and Tits boundaries of $\mathbf X$ and give conditions under which the natural CAT(1) metric on $\partial_\Delta\mathbf X$ makes it (quasi)isometric to the Tits boundary. $\partial_\Delta\mathbf X$ allows us to interpolate between studying geodesic rays in $\mathbf X$ and the geometry of its \emph{contact graph} $\Gamma\mathbf X$, which is known to be quasi-isometric to a tree, and we characterize essential cube complexes for which the contact graph is bounded. Using related techniques, we study divergence of combinatorial geodesics in $\mathbf X$ using $\partial_\Delta\mathbf X$. Finally, we rephrase the rank-rigidity theorem of Caprace-Sageev in terms of group actions on $\Gamma\mathbf X$ and $\partial_\Delta\mathbf X$ and state characterizations of cubulated groups with linear divergence in terms of $\Gamma\mathbf X$ and $\partial_\Delta\mathbf X$.Comment: Lemma 3.18 was not stated correctly. This is fixed, and a minor adjustment to the beginning of the proof of Theorem 3.19 has been made as a result. Statements other than 3.18 do not need to change. I thank Abdul Zalloum for the correction. See also: arXiv:2004.01182 (this version differs from previous only by addition of the preceding link, at administrators' request

Ramified rectilinear polygons: coordinatization by dendrons

Simple rectilinear polygons (i.e. rectilinear polygons without holes or cutpoints) can be regarded as finite rectangular cell complexes coordinatized by two finite dendrons. The intrinsic $l_1$-metric is thus inherited from the product of the two finite dendrons via an isometric embedding. The rectangular cell complexes that share this same embedding property are called ramified rectilinear polygons. The links of vertices in these cell complexes may be arbitrary bipartite graphs, in contrast to simple rectilinear polygons where the links of points are either 4-cycles or paths of length at most 3. Ramified rectilinear polygons are particular instances of rectangular complexes obtained from cube-free median graphs, or equivalently simply connected rectangular complexes with triangle-free links. The underlying graphs of finite ramified rectilinear polygons can be recognized among graphs in linear time by a Lexicographic Breadth-First-Search. Whereas the symmetry of a simple rectilinear polygon is very restricted (with automorphism group being a subgroup of the dihedral group $D_4$), ramified rectilinear polygons are universal: every finite group is the automorphism group of some ramified rectilinear polygon.Comment: 27 pages, 6 figure