Geodetic topological cycles in locally finite graphs

We prove that the topological cycle space C(G) of a locally finite graph G is generated by its geodetic topological circles. We further show that, although the finite cycles of G generate C(G), its finite geodetic cycles need not generate C(G).Comment: 1

An explicit universal cycle for the (n-1)-permutations of an n-set

We show how to construct an explicit Hamilton cycle in the directed Cayley graph Cay({\sigma_n, sigma_{n-1}} : \mathbb{S}_n), where \sigma_k = (1 2 >... k). The existence of such cycles was shown by Jackson (Discrete Mathematics, 149 (1996) 123-129) but the proof only shows that a certain directed graph is Eulerian, and Knuth (Volume 4 Fascicle 2, Generating All Tuples and Permutations (2005)) asks for an explicit construction. We show that a simple recursion describes our Hamilton cycle and that the cycle can be generated by an iterative algorithm that uses O(n) space. Moreover, the algorithm produces each successive edge of the cycle in constant time; such algorithms are said to be loopless

Finding kk Simple Shortest Paths and Cycles

The problem of finding multiple simple shortest paths in a weighted directed graph $G=(V,E)$ has many applications, and is considerably more difficult than the corresponding problem when cycles are allowed in the paths. Even for a single source-sink pair, it is known that two simple shortest paths cannot be found in time polynomially smaller than $n^3$ (where $n=|V|$) unless the All-Pairs Shortest Paths problem can be solved in a similar time bound. The latter is a well-known open problem in algorithm design. We consider the all-pairs version of the problem, and we give a new algorithm to find $k$ simple shortest paths for all pairs of vertices. For $k=2$, our algorithm runs in $O(mn + n^2 \log n)$ time (where $m=|E|$), which is almost the same bound as for the single pair case, and for $k=3$ we improve earlier bounds. Our approach is based on forming suitable path extensions to find simple shortest paths; this method is different from the `detour finding' technique used in most of the prior work on simple shortest paths, replacement paths, and distance sensitivity oracles. Enumerating simple cycles is a well-studied classical problem. We present new algorithms for generating simple cycles and simple paths in $G$ in non-decreasing order of their weights; the algorithm for generating simple paths is much faster, and uses another variant of path extensions. We also give hardness results for sparse graphs, relative to the complexity of computing a minimum weight cycle in a graph, for several variants of problems related to finding $k$ simple paths and cycles.Comment: The current version includes new results for undirected graphs. In Section 4, the notion of an (m,n) reduction is generalized to an f(m,n) reductio

Single-Strip Triangulation of Manifolds with Arbitrary Topology

Triangle strips have been widely used for efficient rendering. It is NP-complete to test whether a given triangulated model can be represented as a single triangle strip, so many heuristics have been proposed to partition models into few long strips. In this paper, we present a new algorithm for creating a single triangle loop or strip from a triangulated model. Our method applies a dual graph matching algorithm to partition the mesh into cycles, and then merges pairs of cycles by splitting adjacent triangles when necessary. New vertices are introduced at midpoints of edges and the new triangles thus formed are coplanar with their parent triangles, hence the visual fidelity of the geometry is not changed. We prove that the increase in the number of triangles due to this splitting is 50% in the worst case, however for all models we tested the increase was less than 2%. We also prove tight bounds on the number of triangles needed for a single-strip representation of a model with holes on its boundary. Our strips can be used not only for efficient rendering, but also for other applications including the generation of space filling curves on a manifold of any arbitrary topology.Comment: 12 pages, 10 figures. To appear at Eurographics 200

Composability of Markov Models for Processing Sensor Data

We show that it is possible to apply the divide-and-conquer principle in constructing a Markov model for sensor data from available sensor logs. The state space can be partitioned into clusters, for which the required transition counts or probabilities can be acquired locally. The combination of these local parameters into a global model takes the form of a system of linear equations with a confined solution space. Expected advantages of this approach lie for example in reduced (wireless) communication costs

ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra

Background: Many biological systems are modeled qualitatively with discrete models, such as probabilistic Boolean networks, logical models, Petri nets, and agent-based models, with the goal to gain a better understanding of the system. The computational complexity to analyze the complete dynamics of these models grows exponentially in the number of variables, which impedes working with complex models. Although there exist sophisticated algorithms to determine the dynamics of discrete models, their implementations usually require labor-intensive formatting of the model formulation, and they are oftentimes not accessible to users without programming skills. Efficient analysis methods are needed that are accessible to modelers and easy to use. Method: By converting discrete models into algebraic models, tools from computational algebra can be used to analyze their dynamics. Specifically, we propose a method to identify attractors of a discrete model that is equivalent to solving a system of polynomial equations, a long-studied problem in computer algebra. Results: A method for efficiently identifying attractors, and the web-based tool Analysis of Dynamic Algebraic Models (ADAM), which provides this and other analysis methods for discrete models. ADAM converts several discrete model types automatically into polynomial dynamical systems and analyzes their dynamics using tools from computer algebra. Based on extensive experimentation with both discrete models arising in systems biology and randomly generated networks, we found that the algebraic algorithms presented in this manuscript are fast for systems with the structure maintained by most biological systems, namely sparseness, i.e., while the number of nodes in a biological network may be quite large, each node is affected only by a small number of other nodes, and robustness, i.e., small number of attractors