A Step-by-Step Guide to Initialize and Calibrate Landscape Models: A Case Study in the Mediterranean Mountains

MS-M was supported by the Spanish Ministry of Science and Innovation (FPU predoctoral grant and the project PROPIFEN PGC2018-101773-B-I00). MM acknowledges a grant from the Swiss National Science Foundation (project n.175101) and funding from the Canada Research Chairs Program. PS was funded by the project "Ecologia Funcional de los Bosques Andaluces y Predicciones Sobre Sus Cambios Futuros" (ForChange) (UCO-27943) by Junta de Andalucia (Spain), the project "Funcionalidad y servicios ecosistemicos de los bosques andaluces y normarroquies: relaciones con la diversidad vegetal y edafica ante el cambio climatico" by "Ayudas a la I CD del Plan Andaluz de Investigacion, Desarrollo e Innovacion (PAIDI) 2020," Junta de Andalucia (Spain) and European FEDER funds. JQ and RN-C were funded by the project ESPECTRAMED (CGL2018-86161-R) from Spanish Research Agency, Ministry of Science and Innovation. RN-C was funded by the projects ISOPINE (UCO-1265298) and SilvAdpat Network RED2018-102719.We acknowledge the E-OBS dataset from the EU-FP6 project UERRA (http://www.uerra.eu) and the Copernicus Climate Change Service, and the data providers in the ECA&D project (https://www.ecad.eu). We thank Robert Scheller, Brian Miranda, Rafael Villar, and Núria Aquilué for useful insights on project conceptualization during the initial steps of this work. We also thank two reviewers for the comments and suggestions made to earlier versions of this manuscript.The use of spatially interactive forest landscape models has increased in recent years. These models are valuable tools to assess our knowledge about the functioning and provisioning of ecosystems as well as essential allies when predicting future changes. However, developing the necessary inputs and preparing them for research studies require substantial initial investments in terms of time. Although model initialization and calibration often take the largest amount of modelers' efforts, such processes are rarely reported thoroughly in application studies. Our study documents the process of calibrating and setting up an ecophysiologically based forest landscape model (LANDIS-II with PnET-Succession) in a biogeographical region where such a model has never been applied to date (southwestern Mediterranean mountains in Europe). We describe the methodological process necessary to produce the required spatial inputs expressing initial vegetation and site conditions. We test model behaviour on single-cell simulations and calibrate species parameters using local biomass estimations and literature information. Finally, we test how different initialization data-with and without shrub communities-influence the simulation of forest dynamics by applying the calibrated model at landscape level. Combination of plot-level data with vegetation maps allowed us to generate a detailed map of initial tree and shrub communities. Single-cell simulations revealed that the model was able to reproduce realistic biomass estimates and competitive effects for different forest types included in the landscape, as well as plausible monthly growth patterns of species growing in Mediterranean mountains. Our results highlight the importance of considering shrub communities in forest landscape models, as they influence the temporal dynamics of tree species. Besides, our results show that, in the absence of natural disturbances, harvesting or climate change, landscape-level simulations projected a general increase of biomass of several species over the next decades but with distinct spatio-temporal patterns due to competitive effects and landscape heterogeneity. Providing a step-by-step workflow to initialize and calibrate a forest landscape model, our study encourages new users to use such tools in forestry and climate change applications. Thus, we advocate for documenting initialization processes in a transparent and reproducible manner in forest landscape modelling.Spanish Government PROPIFEN PGC2018-101773-B-I00Swiss National Science Foundation (SNSF) European Commission 175101Canada Research ChairsJunta de Andalucia European Commission UCO-27943project "Funcionalidad y servicios ecosistemicos de los bosques andaluces y normarroquies: relaciones con la diversidad vegetal y edafica ante el cambio climatico" by "Ayudas a la I CD del Plan Andaluz de Investigacion, Desarrollo e Innovacion (PAIDI) 2020European Commissionproject ESPECTRAMED from Spanish Research Agency, Ministry of Science and Innovation CGL2018-86161-Rproject ISOPINE UCO-1265298Project SilvAdpat Network RED2018-102719Spanish Ministry of Science and Innovation (FPU predoctoral grant

Scaling and balancing carbon dioxide fluxes in a heterogeneous tundra ecosystem of the Lena River Delta

The current assessments of the carbon turnover in the Arctic tundra are subject to large uncertainties. This problem can (inter alia) be ascribed to both the general shortage of flux data from the vast and sparsely inhabited Arctic region, as well as the typically high spatiotemporal variability of carbon fluxes in tundra ecosystems. Addressing these challenges, carbon dioxide fluxes on an active flood plain situated in the Siberian Lena River Delta were studied during two growing seasons with the eddy covariance method. The footprint exhibited a heterogeneous surface, which generated mixed flux signals that could be partitioned in such a way that both respiratory loss and photosynthetic gain were obtained for each of two vegetation classes. This downscaling of the observed fluxes revealed a differing seasonality in the net uptake of bushes (−0.89 µmol m−2 s−1) and sedges (−0.38 µmol mm−2 s−1) in 2014. That discrepancy, which was concealed in the net signal, resulted from a comparatively warm spring in conjunction with an early snowmelt and a varying canopy structure. Thus, the representativeness of footprints may adversely be affected in response to prolonged unusual weather conditions. In 2015, when air temperatures on average corresponded to climatological means, both vegetation-class-specific flux rates were of similar magnitude (−0.69 µmol m−2 s−1). A comprehensive set of measures (e.g. phenocam) corroborated the reliability of the partitioned fluxes and hence confirmed the utility of flux decomposition for enhanced flux data analysis. This scrutiny encompassed insights into both the phenological dynamic of individual vegetation classes and their respective functional flux to flux driver relationships with the aid of ecophysiologically interpretable parameters. For comparison with other sites, the decomposed fluxes were employed in a vegetation class area-weighted upscaling that was based on a classified high-resolution orthomosaic of the flood plain. In this way, robust budgets that take the heterogeneous surface characteristics into account were estimated. In relation to the average sink strength of various Arctic flux sites, the flood plain constitutes a distinctly stronger carbon dioxide sink. Roughly 42 % of this net uptake, however, was on average offset by methane emissions lowering the sink strength for greenhouse gases. With growing concern about rising greenhouse gas emissions in high-latitude regions, providing robust carbon budgets from tundra ecosystems is critical in view of accelerating permafrost thaw, which can impact the global climate for centuries

Impact of climate change on forest resources: Case of Quercus rotundifolia, Tetraclinis articulata, Juniperus phoenicea, J. oxycedrus, J. thurifera and Pinus halepensis

Forest resources in the Ourika watershed are subject to several anthropogenic and climatic degradation factors. As for the human factor, this degradation of forest resources is explained by the bad practices exercised by the local population expressed by the cutting of live wood, carbonization, and overgrazing. In terms of the climatic factor, the decrease in the amount of rainfall and the increase in temperature contribute to the exacerbation of the degradation of these resources. In order to better understand the evolution of plant cover in a changing climate context, this study highlights an assessment of the impact of climate change on forest dynamics based on a process-based model at the forest landscape scale which makes it possible to simulate the changes according to growth, succession, disturbances (fire, wind, insects, etc), forest management, and land use change. This analysis is based on the use of the LANDIS-II model and the PnET-succession extension. Projections of the dynamics of forest communities are made using climate projections from the Japanese global circulation model adopted by Morocco (model for interdisciplinary research on climate – earth system models) and this by adopting the two climate scenarios , representative concentration pathways 4.5 and 8.5. The results obtained highlight the spatial distribution of the ecosystems studied after 100 years with a quantitative evaluation of the total average biomass of these resources as a function of climatic disturbances. In general, the estimated total biomass will decline over the coming years under the joint effect of the climate change and the aging of forest stands, while on the other hand, the distribution of potential areas for species settlement remains independent of the effect of these climate changes

Pattern and process in Amazon tree turnover, 1976-2001

Previous work has shown that tree turnover, tree biomass and large liana densities have increased in mature tropical forest plots in the late twentieth century. These results point to a concerted shift in forest ecological processes that may already be having significant impacts on terrestrial carbon stocks, fluxes and biodiversity. However, the findings have proved controversial, partly because a rather limited number of permanent plots have been monitored for rather short periods. The aim of this paper is to characterize regional-scale patterns of 'tree turnover' (the rate with which trees die and recruit into a population) by using improved datasets now available for Amazonia that span the past 25 years. Specifically, we assess whether concerted changes in turnover are occurring, and if so whether they are general throughout the Amazon or restricted to one region or environmental zone. In addition, we ask whether they are driven by changes in recruitment, mortality or both. We find that: (i) trees 10 cm or more in diameter recruit and die twice as fast on the richer soils of southern and western Amazonia than on the poorer soils of eastern and central Amazonia; (ii) turnover rates have increased throughout Amazonia over the past two decades; (iii) mortality and recruitment rates have both increased significantly in every region and environmental zone, with the exception of mortality in eastern Amazonia; (iv) recruitment rates have consistently exceeded mortality rates; (v) absolute increases in recruitment and mortality rates are greatest in western Amazonian sites; and (vi) mortality appears to be lagging recruitment at regional scales. These spatial patterns and temporal trends are not caused by obvious artefacts in the data or the analyses. The trends cannot be directly driven by a mortality driver (such as increased drought or fragmentation-related death) because the biomass in these forests has simultaneously increased. Our findings therefore indicate that long-acting and widespread environmental changes are stimulating the growth and productivity of Amazon forests

Selection of provenances to adapt tropical pine forestry to climate change on the basis of climate analogs

Pinus patula and Pinus tecunumanii play an important role in the forestry sector in the tropics and subtropics and, in recent decades, members of the International Tree Breeding and Conservation Program (Camcore) at North Carolina State University have established large, multi-site provenance trials for these pine species. The data collected in these trials provide valuable information about species and provenance choice for plantation establishment in many regions with different climates. Since climate is changing rapidly, it may become increasingly difficult to choose the right species and provenance to plant. In this study, growth performance of plantings in Colombia, Brazil and South Africa was correlated to the degree of climatic dissimilarity between planting sites. Results are used to assess the suitability of seed material under a changing climate for four P. patula provenances and six P. tecunumanii provenances. For each provenance, climate dissimilarities based on standardized Euclidean distances were calculated and statistically related to growth performances. We evaluated the two methods of quantifying climate dissimilarity with extensive field data based on the goodness of fit and statistical significance of the climate distance relation to differences in height growth. The best method was then used as a predictor of a provenance change in height growth. The provenance-specific models were used to predict provenance performance under different climate change scenarios. The developed provenance-specific models were able to significantly relate climate similarity to different growth performances for five out of six P. tecunumanii provenances. For P. patula provenances, we did not find any correlation. Results point towards the importance of the identification of sites with stable climates where high yields are achievable. In such sites, fast-growing P. tecunumanii provenances with a high but narrow growth optimum can be planted. At sites with climate change of uncertain direction and magnitude, the choice of P. patula provenances, with greater tolerance towards different temperature and precipitation regimes, is recommended. Our results indicate that the analysis of provenance trial data with climate similarity models helps us to (1) maintain plantation productivity in a rapidly changing environment; and (2) improve our understanding of tree species’ adaptation to a changing climate

Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply

Atmospheric conditions are expected to become warmer and drier in the future, but little is known about how evaporative demand influences forest structure and function independently from soil moisture availability, and how fast-response variables (such as canopy water potential and stomatal conductance) may mediate longer-term changes in forest structure and function in response to climate change. We used two tropical rainforest sites with different temperatures and vapour pressure deficits (VPD), but nonlimiting soil water supply, to assess the impact of evaporative demand on ecophysiological function and forest structure. Common species between sites allowed us to test the extent to which species composition, relative abundance and intraspecific variability contributed to site-level differences. The highest VPD site had lower midday canopy water potentials, canopy conductance (gc), annual transpiration, forest stature, and biomass, while the transpiration rate was less sensitive to changes in VPD; it also had different height–diameter allometry (accounting for 51% of the difference in biomass between sites) and higher plot-level wood density. Our findings suggest that increases in VPD, even in the absence of soil water limitation, influence fast-response variables, such as canopy water potentials and gc, potentially leading to longer-term changes in forest stature resulting in reductions in biomass

Assessing the impact of forest structure disturbances on the arboreal movement and energetics of orangutans—An agent-based modeling approach

This is the final version. Available from Frontiers Media via the DOI in this record. Data availability statement: The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary material.Agent-based models have been developed and widely employed to assess the impact of disturbances or conservation management on animal habitat use, population development, and viability. However, the direct impacts of canopy disturbance on the arboreal movement of individual primates have been less studied. Such impacts could shed light on the cascading effects of disturbances on animal health and fitness. Orangutans are an arboreal primate that commonly encounters habitat quality deterioration due to land-use changes and related disturbances such as forest fires. Forest disturbance may, therefore, create a complex stress scenario threatening orangutan populations. Due to forest disturbances, orangutans may adapt to employ more terrestrial, as opposed to arboreal, movements potentially prolonging the search for fruiting and nesting trees. In turn, this may lead to changes in daily activity patterns (i.e., time spent traveling, feeding, and resting) and available energy budget, potentially decreasing the orangutan's fitness. We developed the agent-based simulation model BORNEO (arBOReal aNimal movEment mOdel), which explicitly describes both orangutans' arboreal and terrestrial movement in a forest habitat, depending on distances between trees and canopy structures. Orangutans in the model perform activities with a motivation to balance energy intake and expenditure through locomotion. We tested the model using forest inventory data obtained in Sebangau National Park, Central Kalimantan, Indonesia. This allowed us to construct virtual forests with real characteristics including tree connectivity, thus creating the potential to expand the environmental settings for simulation experiments. In order to parameterize the energy related processes of the orangutans described in the model, we applied a computationally intensive evolutionary algorithm and evaluated the simulation results against observed behavioral patterns of orangutans. Both the simulated variability and proportion of activity budgets including feeding, resting, and traveling time for female and male orangutans confirmed the suitability of the model for its purpose. We used the calibrated model to compare the activity patterns and energy budgets of orangutans in both natural and disturbed forests. The results confirm field observations that orangutans in the disturbed forest are more likely to experience deficit energy balance due to traveling to the detriment of feeding time. Such imbalance is more pronounced in males than in females. The finding of a threshold of forest disturbances that affects a significant change in activity and energy budgets suggests potential threats to the orangutan population. Our study introduces the first agent-based model describing the arboreal movement of primates that can serve as a tool to investigate the direct impact of forest changes and disturbances on the behavior of species such as orangutans. Moreover, it demonstrates the suitability of high-performance computing to optimize the calibration of complex agent-based models describing animal behavior at a fine spatio-temporal scale (1-m and 1-s granularity).UKR

Modelling the distribution for Bohemanella frigida at the northern range boundary: habitat preferences and morphological features

Masteroppgave i terrestrisk økologi og naturforvaltning - Nord universitet 2020Sperret til 2023-09-1

Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply

This is the final version. Available on open access from Wiley via the DOI in this recordData availability: All data are available from the Terrestrial Ecosystem Research Network (TERN) Data Portal: https://portal.tern.org.au/metadata/TERN/db33762b-1199-4dbd-b151-b6ce8d5ad042. doi: https://doi.org/10.25901/86yk-5m77.Atmospheric conditions are expected to become warmer and drier in the future, but little is known about how evaporative demand influences forest structure and function independently from soil moisture availability, and how fast-response variables (such as canopy water potential and stomatal conductance) may mediate longer-term changes in forest structure and function in response to climate change. We used two tropical rainforest sites with different temperatures and vapour pressure deficits (VPD), but nonlimiting soil water supply, to assess the impact of evaporative demand on ecophysiological function and forest structure. Common species between sites allowed us to test the extent to which species composition, relative abundance and intraspecific variability contributed to site-level differences. The highest VPD site had lower midday canopy water potentials, canopy conductance (gc ), annual transpiration, forest stature, and biomass, while the transpiration rate was less sensitive to changes in VPD; it also had different height-diameter allometry (accounting for 51% of the difference in biomass between sites) and higher plot-level wood density. Our findings suggest that increases in VPD, even in the absence of soil water limitation, influence fast-response variables, such as canopy water potentials and gc , potentially leading to longer-term changes in forest stature resulting in reductions in biomass.Australian Research Council (ARC)Catalan science and technology grant, Beatriu de Pinó