Directional Bilateral Filters

We propose a bilateral filter with a locally controlled domain kernel for directional edge-preserving smoothing. Traditional bilateral filters use a range kernel, which is responsible for edge preservation, and a fixed domain kernel that performs smoothing. Our intuition is that orientation and anisotropy of image structures should be incorporated into the domain kernel while smoothing. For this purpose, we employ an oriented Gaussian domain kernel locally controlled by a structure tensor. The oriented domain kernel combined with a range kernel forms the directional bilateral filter. The two kernels assist each other in effectively suppressing the influence of the outliers while smoothing. To find the optimal parameters of the directional bilateral filter, we propose the use of Stein's unbiased risk estimate (SURE). We test the capabilities of the kernels separately as well as together, first on synthetic images, and then on real endoscopic images. The directional bilateral filter has better denoising performance than the Gaussian bilateral filter at various noise levels in terms of peak signal-to-noise ratio (PSNR)

An extension of min/max flow framework

In this paper, the min/max flow scheme for image restoration is revised. The novelty consists of the fol- 24 lowing three parts. The first is to analyze the reason of the speckle generation and then to modify the 25 original scheme. The second is to point out that the continued application of this scheme cannot result 26 in an adaptive stopping of the curvature flow. This is followed by modifications of the original scheme 27 through the introduction of the Gradient Vector Flow (GVF) field and the zero-crossing detector, so as 28 to control the smoothing effect. Our experimental results with image restoration show that the proposed 29 schemes can reach a steady state solution while preserving the essential structures of objects. The third is 30 to extend the min/max flow scheme to deal with the boundary leaking problem, which is indeed an 31 intrinsic shortcoming of the familiar geodesic active contour model. The min/max flow framework pro- 32 vides us with an effective way to approximate the optimal solution. From an implementation point of 33 view, this extended scheme makes the speed function simpler and more flexible. The experimental 34 results of segmentation and region tracking show that the boundary leaking problem can be effectively 35 suppressed

A multi-view approach to cDNA micro-array analysis

The official published version can be obtained from the link below.Microarray has emerged as a powerful technology that enables biologists to study thousands of genes simultaneously, therefore, to obtain a better understanding of the gene interaction and regulation mechanisms. This paper is concerned with improving the processes involved in the analysis of microarray image data. The main focus is to clarify an image's feature space in an unsupervised manner. In this paper, the Image Transformation Engine (ITE), combined with different filters, is investigated. The proposed methods are applied to a set of real-world cDNA images. The MatCNN toolbox is used during the segmentation process. Quantitative comparisons between different filters are carried out. It is shown that the CLD filter is the best one to be applied with the ITE.This work was supported in part by the Engineering and Physical Sciences Research Council (EPSRC) of the UK under Grant GR/S27658/01, the National Science Foundation of China under Innovative Grant 70621001, Chinese Academy of Sciences under Innovative Group Overseas Partnership Grant, the BHP Billiton Cooperation of Australia Grant, the International Science and Technology Cooperation Project of China under Grant 2009DFA32050 and the Alexander von Humboldt Foundation of Germany

Automatic segmentation of the left ventricle cavity and myocardium in MRI data

A novel approach for the automatic segmentation has been developed to extract the epi-cardium and endo-cardium boundaries of the left ventricle (lv) of the heart. The developed segmentation scheme takes multi-slice and multi-phase magnetic resonance (MR) images of the heart, transversing the short-axis length from the base to the apex. Each image is taken at one instance in the heart's phase. The images are segmented using a diffusion-based filter followed by an unsupervised clustering technique and the resulting labels are checked to locate the (lv) cavity. From cardiac anatomy, the closest pool of blood to the lv cavity is the right ventricle cavity. The wall between these two blood-pools (interventricular septum) is measured to give an approximate thickness for the myocardium. This value is used when a radial search is performed on a gradient image to find appropriate robust segments of the epi-cardium boundary. The robust edge segments are then joined using a normal spline curve. Experimental results are presented with very encouraging qualitative and quantitative results and a comparison is made against the state-of-the art level-sets method