Living with inconsistencies in a multidatabase system

Integration of autonomous sources of information is one of the most important problems in implementation of the global information systems. This paper considers multidatabase systems as one of the typical architectures of global information services and addresses a problem of storing and processing inconsistent information in such systems. A new data model proposed in the paper separates sure from inconsistent information and introduces a system of elementary operations on the containers with sure and inconsistent information. A review of the implementation aspects in an environment of a typical relational database management system concludes the paper

Living with inconsistencies in a multidatabase system

Integration of autonomous sources of information is one of the most important problems in implementation of the global information systems. This paper considers multidatabase systems as one of the typical architectures of global information services and addresses a problem of storing and processing inconsistent information in such systems. A new data model proposed in the paper separates sure from inconsistent information and introduces a system of elementary operations on the containers with sure and inconsistent information. A review of the implementation aspects in an environment of a typical relational database management system concludes the paper

Assessment of Cancer-Related Fatigue in Breast Cancer Survivors

Cancer-related fatigue (CRF) is a persistent and debilitating problem for many breast cancer survivors. Although many CRF measurement tools are available, no consensus exists on the most appropriate tool to use for breast cancer survivors. The purpose of this project was to identify the best method of assessing CRF in breast cancer survivors. The practice-focused question inquired about the most appropriate way to assess fatigue in breast cancer survivors. The central concepts of the project were CRF and cancer survivorship. This project was informed by the theory of health as expanding consciousness and Mishel\u27s theory of uncertainty in illness. The sources of evidence included multi-database searches and literature from professional organizations. Results were tracked using preferred reporting items for systematic reviews and metasystems and a literature review matrix. The search identified 14 sources, which were assessed for quality using the grading of recommendations, assessment, development, and evaluation process. The results of this systematic review did not support the use of any particular assessment tool; however, 2 clinical practice guidelines recommended screening using a numerical severity scale followed by detailed assessment of clinically significant fatigue using available assessment tools. Screening can be implemented into the survivorship clinic, allowing nurses to identify potentially clinically significant fatigue so that further workup is done and interventions are implemented. Identifying, assessing, and intervening for clinically significant fatigue can improve the quality of life for breast cancer survivors, contributing to positive social change

A Scalable Blocking Framework for Multidatabase Privacy-preserving Record Linkage

Today many application domains, such as national statistics, healthcare, business analytic, fraud detection, and national security, require data to be integrated from multiple databases. Record linkage (RL) is a process used in data integration which links multiple databases to identify matching records that belong to the same entity. RL enriches the usefulness of data by removing duplicates, errors, and inconsistencies which improves the effectiveness of decision making in data analytic applications. Often, organisations are not willing or authorised to share the sensitive information in their databases with any other party due to privacy and confidentiality regulations. The linkage of databases of different organisations is an emerging research area known as privacy-preserving record linkage (PPRL). PPRL facilitates the linkage of databases by ensuring the privacy of the entities in these databases. In multidatabase (MD) context, PPRL is significantly challenged by the intrinsic exponential growth in the number of potential record pair comparisons. Such linkage often requires significant time and computational resources to produce the resulting matching sets of records. Due to increased risk of collusion, preserving the privacy of the data is more problematic with an increase of number of parties involved in the linkage process. Blocking is commonly used to scale the linkage of large databases. The aim of blocking is to remove those record pairs that correspond to non-matches (refer to different entities). Many techniques have been proposed for RL and PPRL for blocking two databases. However, many of these techniques are not suitable for blocking multiple databases. This creates a need to develop blocking technique for the multidatabase linkage context as real-world applications increasingly require more than two databases. This thesis is the first to conduct extensive research on blocking for multidatabase privacy-preserved record linkage (MD-PPRL). We consider several research problems in blocking of MD-PPRL. First, we start with a broad background literature on PPRL. This allow us to identify the main research gaps that need to be investigated in MD-PPRL. Second, we introduce a blocking framework for MD-PPRL which provides more flexibility and control to database owners in the block generation process. Third, we propose different techniques that are used in our framework for (1) blocking of multiple databases, (2) identifying blocks that need to be compared across subgroups of these databases, and (3) filtering redundant record pair comparisons by the efficient scheduling of block comparisons to improve the scalability of MD-PPRL. Each of these techniques covers an important aspect of blocking in real-world MD-PPRL applications. Finally, this thesis reports on an extensive evaluation of the combined application of these methods with real datasets, which illustrates that they outperform existing approaches in term of scalability, accuracy, and privacy

31th International Conference on Information Modelling and Knowledge Bases

Information modelling is becoming more and more important topic for researchers, designers, and users of information systems.The amount and complexity of information itself, the number of abstractionlevels of information, and the size of databases and knowledge bases arecontinuously growing. Conceptual modelling is one of the sub-areas ofinformation modelling. The aim of this conference is to bring together experts from different areas of computer science and other disciplines, who have a common interest in understanding and solving problems on information modelling and knowledge bases, as well as applying the results of research to practice. We also aim to recognize and study new areas on modelling and knowledge bases to which more attention should be paid. Therefore philosophy and logic, cognitive science, knowledge management, linguistics and management science are relevant areas, too. In the conference, there will be three categories of presentations, i.e. full papers, short papers and position papers

30th International Conference on Information Modelling and Knowledge Bases

Information modelling is becoming more and more important topic for researchers, designers, and users of information systems. The amount and complexity of information itself, the number of abstraction levels of information, and the size of databases and knowledge bases are continuously growing. Conceptual modelling is one of the sub-areas of information modelling. The aim of this conference is to bring together experts from different areas of computer science and other disciplines, who have a common interest in understanding and solving problems on information modelling and knowledge bases, as well as applying the results of research to practice. We also aim to recognize and study new areas on modelling and knowledge bases to which more attention should be paid. Therefore philosophy and logic, cognitive science, knowledge management, linguistics and management science are relevant areas, too. In the conference, there will be three categories of presentations, i.e. full papers, short papers and position papers

Protein Structure Data Management System

With advancement in the development of the new laboratory instruments and experimental techniques, the protein data has an explosive increasing rate. Therefore how to efficiently store, retrieve and modify protein data is becoming a challenging issue that most biological scientists have to face and solve. Traditional data models such as relational database lack of support for complex data types, which is a big issue for protein data application. Hence many scientists switch to the object-oriented databases since object-oriented nature of life science data perfectly matches the architecture of object-oriented databases, but there are still a lot of problems that need to be solved in order to apply OODB methodologies to manage protein data. One major problem is that the general-purpose OODBs do not have any built-in data types for biological research and built-in biological domain-specific functional operations. In this dissertation, we present an application system with built-in data types and built-in biological domain-specific functional operations that extends the Object-Oriented Database (OODB) system by adding domain-specific additional layers Protein-QL, Protein Algebra Architecture and Protein-OODB above OODB to manage protein structure data. This system is composed of three parts: 1) Client API to provide easy usage for different users. 2) Middleware including Protein-QL, Protein Algebra Architecture and Protein-OODB is designed to implement protein domain specific query language and optimize the complex queries, also it capsulates the details of the implementation such that users can easily understand and master Protein-QL. 3) Data Storage is used to store our protein data. This system is for protein domain, but it can be easily extended into other biological domains to build a bio-OODBMS. In this system, protein, primary, secondary, and tertiary structures are defined as internal data types to simplify the queries in Protein-QL such that the domain scientists can easily master the query language and formulate data requests, and EyeDB is used as the underlying OODB to communicate with Protein-OODB. In addition, protein data is usually stored as PDB format and PDB format is old, ambiguous, and inadequate, therefore, PDB data curation will be discussed in detail in the dissertation