Neuron Segmentation Using Deep Complete Bipartite Networks

In this paper, we consider the problem of automatically segmenting neuronal cells in dual-color confocal microscopy images. This problem is a key task in various quantitative analysis applications in neuroscience, such as tracing cell genesis in Danio rerio (zebrafish) brains. Deep learning, especially using fully convolutional networks (FCN), has profoundly changed segmentation research in biomedical imaging. We face two major challenges in this problem. First, neuronal cells may form dense clusters, making it difficult to correctly identify all individual cells (even to human experts). Consequently, segmentation results of the known FCN-type models are not accurate enough. Second, pixel-wise ground truth is difficult to obtain. Only a limited amount of approximate instance-wise annotation can be collected, which makes the training of FCN models quite cumbersome. We propose a new FCN-type deep learning model, called deep complete bipartite networks (CB-Net), and a new scheme for leveraging approximate instance-wise annotation to train our pixel-wise prediction model. Evaluated using seven real datasets, our proposed new CB-Net model outperforms the state-of-the-art FCN models and produces neuron segmentation results of remarkable qualityComment: miccai 201

Watch and Learn: Semi-Supervised Learning of Object Detectors from Videos

We present a semi-supervised approach that localizes multiple unknown object instances in long videos. We start with a handful of labeled boxes and iteratively learn and label hundreds of thousands of object instances. We propose criteria for reliable object detection and tracking for constraining the semi-supervised learning process and minimizing semantic drift. Our approach does not assume exhaustive labeling of each object instance in any single frame, or any explicit annotation of negative data. Working in such a generic setting allow us to tackle multiple object instances in video, many of which are static. In contrast, existing approaches either do not consider multiple object instances per video, or rely heavily on the motion of the objects present. The experiments demonstrate the effectiveness of our approach by evaluating the automatically labeled data on a variety of metrics like quality, coverage (recall), diversity, and relevance to training an object detector.Comment: To appear in CVPR 201