A Survey of Techniques for Architecting TLBs

“Translation lookaside buffer” (TLB) caches virtual to physical address translation information and is used in systems ranging from embedded devices to high-end servers. Since TLB is accessed very frequently and a TLB miss is extremely costly, prudent management of TLB is important for improving performance and energy efficiency of processors. In this paper, we present a survey of techniques for architecting and managing TLBs. We characterize the techniques across several dimensions to highlight their similarities and distinctions. We believe that this paper will be useful for chip designers, computer architects and system engineers

A Safety-First Approach to Memory Models.

Sequential consistency (SC) is arguably the most intuitive behavior for a shared-memory multithreaded program. It is widely accepted that language-level SC could significantly improve programmability of a multiprocessor system. However, efficiently supporting end-to-end SC remains a challenge as it requires that both compiler and hardware optimizations preserve SC semantics. Current concurrent languages support a relaxed memory model that requires programmers to explicitly annotate all memory accesses that can participate in a data-race ("unsafe" accesses). This requirement allows compiler and hardware to aggressively optimize unannotated accesses, which are assumed to be data-race-free ("safe" accesses), while still preserving SC semantics. However, unannotated data races are easy for programmers to accidentally introduce and are difficult to detect, and in such cases the safety and correctness of programs are significantly compromised. This dissertation argues instead for a safety-first approach, whereby every memory operation is treated as potentially unsafe by the compiler and hardware unless it is proven otherwise. The first solution, DRFx memory model, allows many common compiler and hardware optimizations (potentially SC-violating) on unsafe accesses and uses a runtime support to detect potential SC violations arising from reordering of unsafe accesses. On detecting a potential SC violation, execution is halted before the safety property is compromised. The second solution takes a different approach and preserves SC in both compiler and hardware. Both SC-preserving compiler and hardware are also built on the safety-first approach. All memory accesses are treated as potentially unsafe by the compiler and hardware. SC-preserving hardware relies on different static and dynamic techniques to identify safe accesses. Our results indicate that supporting SC at the language level is not expensive in terms of performance and hardware complexity. The dissertation also explores an extension of this safety-first approach for data-parallel accelerators such as Graphics Processing Units (GPUs). Significant microarchitectural differences between CPU and GPU require rethinking of efficient solutions for preserving SC in GPUs. The proposed solution based on our SC-preserving approach performs nearly on par with the baseline GPU that implements a data-race-free-0 memory model.PhDComputer Science and EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/120794/1/ansingh_1.pd

Dynamic Orchestration of Massively Data Parallel Execution.

Graphics processing units (GPUs) are specialized hardware accelerators capable of rendering graphics much faster than conventional general-purpose processors. They are widely used in personal computers, tablets, mobile phones, and game consoles. Modern GPUs are not only efficient at manipulating computer graphics, but also are more effective than CPUs for algorithms where processing of large data blocks can be done in parallel. This is mainly due to their highly parallel architecture. While GPUs provide low-cost and efficient platforms for accelerating massively parallel applications, tedious performance tuning is required to maximize application execution efficiency. Achieving high performance requires the programmers to manually manage the amount of on-chip memory used per thread, the total number of threads per multiprocessor, the pattern of off-chip memory accesses, etc. In addition to a complex programming model, there is a lack of performance portability across various systems with different runtime properties. Programmers usually make assumptions about runtime properties when they write code and optimize that code based on those assumptions. However, if any of these properties changes during execution, the optimized code performs poorly. To alleviate these limitations, several implementations of the application are needed to maximize performance for different runtime properties. However, it is not practical for the programmer to write several different versions of the same code which are optimized for each individual runtime condition. In this thesis, we propose a static and dynamic compiler framework to take the burden of fine tuning different implementations of the same code off the programmer. This framework enables the programmer to write the program once and allow a static compiler to generate different versions of a data parallel application with several tuning parameters. The runtime system selects the best version and fine tunes its parameters based on runtime properties such as device configuration, input size, dependency, and data values.PhDComputer Science & EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/108805/1/mehrzads_1.pd

High-level automation of custom hardware design for high-performance computing

This dissertation focuses on efficient generation of custom processors from high-level language descriptions. Our work exploits compiler-based optimizations and transformations in tandem with high-level synthesis (HLS) to build high-performance custom processors. The goal is to offer a common multiplatform high-abstraction programming interface for heterogeneous compute systems where the benefits of custom reconfigurable (or fixed) processors can be exploited by the application developers. The research presented in this dissertation supports the following thesis: In an increasingly heterogeneous compute environment it is important to leverage the compute capabilities of each heterogeneous processor efficiently. In the case of FPGA and ASIC accelerators this can be achieved through HLS-based flows that (i) extract parallelism at coarser than basic block granularities, (ii) leverage common high-level parallel programming languages, and (iii) employ high-level source-to-source transformations to generate high-throughput custom processors. First, we propose a novel HLS flow that extracts instruction level parallelism beyond the boundary of basic blocks from C code. Subsequently, we describe FCUDA, an HLS-based framework for mapping fine-grained and coarse-grained parallelism from parallel CUDA kernels onto spatial parallelism. FCUDA provides a common programming model for acceleration on heterogeneous devices (i.e. GPUs and FPGAs). Moreover, the FCUDA framework balances multilevel granularity parallelism synthesis using efficient techniques that leverage fast and accurate estimation models (i.e. do not rely on lengthy physical implementation tools). Finally, we describe an advanced source-to-source transformation framework for throughput-driven parallelism synthesis (TDPS), which appropriately restructures CUDA kernel code to maximize throughput on FPGA devices. We have integrated the TDPS framework into the FCUDA flow to enable automatic performance porting of CUDA kernels designed for the GPU architecture onto the FPGA architecture

Fine-grained containment domains for throughput processors

Continued scaling of semiconductor technology has made modern processors rely on large design margins to guarantee correct operation under worst case conditions. Design margins appear in the form of higher supply voltage or lower clock frequency, leading to inefficiency. In practice, it is rare to observe such worst-case conditions and the processor can run at a reduced voltage or higher frequency experiencing only few infrequent errors. Recent proposals have used hardware error detectors and recovery mechanisms to detect and re- cover from these rare errors, a technique known as timing speculation. While this is effective for out-of-order processors with inherent capability to recover from misspeculation, implementing similar hardware for throughput processors such as the Graphics Processing Units (GPUs) is prohibitively costly due to the massive amount of thread context that needs to be preserved. Further- more, recovery overhead is much higher since the SIMD (Single Instruction Multiple Data) execution model of GPUs require multiple threads to roll back together in case of an error. In this dissertation, I develop a hardware/software co-design approach to enable reduced-margin operation on GPUs that overcomes the limitations of existing techniques. The proposed scheme leverages the hierarchical programming model of GPUs to provide hierarchical and uncoordinated local checkpoint-recovery. By decomposing a program into a hierarchically nested tree of code blocks which I refer to as containment domains (CDs), the pro- gram becomes amenable to automatic analysis and tuning, and an optimum trade-off can be made between preservation and recovery overhead. To aid this optimization process, an analytical model is developed to estimate the performance efficiency of a given application setting at a given error rate. With the analytical model, an exhaustive search can be performed to find the optimal solution. The tunability also allows the proposed scheme to easily adapt to a wide range of error rates making it future proof against emerging uncertainties in semiconductor design. The proposed scheme combines software and hardware components to achieve the highest efficiency in preservation, restoration, and recovery. The software components include: 1) an API and runtime that lets the programmers describe the hierarchy of containment domains within an application and preserve the state required for rollback recovery, and 2) a compiler analysis that automatically inserts preservation routines for register variables. The hardware components include: 1) a stack structure to keep track of recovery program counters (PC), 2) a set of error containment mechanisms to guarantee that no erroneous data is propagated outside of a containment domain and 3) an error reporting architecture that keeps track of affected threads and initiate recovery of them.Electrical and Computer Engineerin

Multicore architecture optimizations for HPC applications

From single-core CPUs to detachable compute accelerators, supercomputers made a tremendous progress by using available transistors on chip and specializing hardware for a given type of computation. Today, compute nodes used in HPC employ multi-core CPUs tailored for serial execution and multiple accelerators (many-core devices or GPUs) for throughput computing. However, designing next-generation HPC system requires not only the performance improvement but also better energy efficiency. Current trend of reaching exascale level of computation asks for at least an order of magnitude increase in both of these metrics. This thesis explores HPC-specific optimizations in order to make better utilization of the available transistors and to improve performance by transparently executing parallel code across multiple GPU accelerators. First, we analyze several HPC benchmark suites, compare them against typical desktop applications, and identify the differences which advocate for proper core tailoring. Moreover, within the HPC applications, we evaluate serial and parallel code sections separately, resulting in an Asymmetric Chip Multiprocessor (ACMP) design with one core optimized for single-thread performance and many lean cores for parallel execution. Our results presented here suggests downsizing of core front-end structures providing an HPC-tailored lean core which saves 16% of the core area and 7% of power, without performance loss. Further improving an ACMP design, we identify that multiple lean cores run the same code during parallel regions. This motivated us to evaluate the idea where lean cores share the I-cache with the intent of benefiting from mutual prefetching, without increasing the average access latency. Our exploration of the multiple parameters finds the sweet spot on a wide interconnect to access the shared I-cache and the inclusion of a few line buffers to provide the required bandwidth and latency to sustain performance. The projections presented in this thesis show additional 11% area savings with a 5% energy reduction at no performance cost. These area and power savings might be attractive for many-core accelerators either for increasing the performance per area and power unit, or adding additional cores and thus improving the performance for the same hardware budget. Finally, in this thesis we study the effects of future NUMA accelerators comprised of multiple GPU devices. Reaching the limits of a single-GPU die size, next-generation GPU compute accelerators will likely embrace multi-socket designs increasing the core count and memory bandwidth. However, maintaining the UMA behavior of a single-GPU in multi-GPU systems without code rewriting stands as a challenge. We investigate multi-socket NUMA GPU designs and show that significant changes are needed to both the GPU interconnect and cache architectures to achieve performance scalability. We show that application phase effects can be exploited allowing GPU sockets to dynamically optimize their individual interconnect and cache policies, minimizing the impact of NUMA effects. Our NUMA-aware GPU outperforms a single GPU by 1.5×, 2.3×, and 3.2× while achieving 89%, 84%, and 76% of theoretical application scalability in 2, 4, and 8 sockets designs respectively. Implementable today, NUMA-aware multi-socket GPUs may be a promising candidate for performance scaling of future compute nodes used in HPC.Empezando por CPUs de un solo procesador, y pasando por aceleradores discretos, los supercomputadores han avanzado enormemente utilizando todos los transistores disponibles en el chip, y especializando los diseños para cada tipo de cálculo. Actualmente, los nodos de cálculo de un sistema de Computación de Altas Prestaciones (CAP) utilizan CPUs de múltiples procesadores, optimizados para el cálculo serial de instrucciones, y múltiples aceleradores (aceleradores gráficos, o many-core), optimizados para el cálculo paralelo. El diseño de un sistema CAP de nueva generación requiere no solo mejorar el rendimiento de cálculo, sino también mejorar la eficiencia energética. La siguiente generación de sistemas requiere mejorar un orden de magnitud en ambas métricas simultáneamente. Esta tesis doctoral explora optimizaciones específicas para sistemas CAP para hacer un mejor uso de los transistores, y para mejorar las prestaciones de forma transparente ejecutando las aplicaciones en múltiples aceleradores en paralelo. Primero, analizamos varios conjuntos de aplicaciones CAP, y las comparamos con aplicaciones para servidores y escritorio, identificando las principales diferencias que nos indican cómo ajustar la arquitectura para CAP. En las aplicaciones CAP, también analizamos la parte secuencial del código y la parte paralela de forma separada, . El resultado de este análisis nos lleva a proponer una arquitectura multiprocesador asimétrica (ACMP) , con un procesador optimizado para el código secuencial, y múltiples procesadores, más pequeños, optimizados para el procesamiento paralelo. Nuestros resultados muestran que reducir el tamaño de las estructuras del front-end (fetch, y predicción de saltos) en los procesadores paralelos nos proporciona un 16% extra de área en el chip, y una reducción de consumo del 7%. Como mejora a nuestra arquitectura ACMP, proponemos explotar el hecho de que todos los procesadores paralelos ejecutan el mismo código al mismo tiempo. Evaluamos una propuesta en que los procesadores paralelos comparten la caché de instrucciones, con la intención de que uno de ellos precargue las instrucciones para los demás procesadores (prefetching), sin aumentar la latencia media de acceso. Nuestra exploración de los distintos parámetros determina que el punto óptimo requiere una interconexión de alto ancho de banda para acceder a la caché compartida, y el uso de unos pocos line buffers para mantener el ancho de banda y la latencia necesarios. Nuestras proyecciones muestran un ahorro adicional del 11% en área y el 5% en energía, sin impacto en el rendimiento. Estos ahorros de área y energía permiten a un multiprocesador incrementar la eficiencia energética, o aumentar el rendimiento añadiendo procesador adicionales. Por último, estudiamos el efecto de usar múltiples aceleradores (GPU) en una arquitectura con tiempo de acceso a memoria no uniforme (NUMA). Una vez alcanzado el límite de número de transistores y tamaño máximo por chip, la siguiente generación de aceleradores deberá utilizar múltiples chips para aumentar el número de procesadores y el ancho de banda de acceso a memoria. Sin embargo, es muy difícil mantener la ilusión de un tiempo de acceso a memoria uniforme en un sistema multi-GPU sin reescribir el código de la aplicación. Nuestra investigación sobre sistemas multi-GPU muestra retos significativos en el diseño de la interconexión entre las GPU y la jerarquía de memorias cache. Nuestros resultados muestran que se puede explotar el comportamiento en fases de las aplicaciones para optimizar la configuración de la interconexión y las cachés de forma dinámica, minimizando el impacto de la arquitectura NUMA. Nuestro diseño mejora el rendimiento de un sistema con una única GPU en 1.5x, 2.3x y 3.2x (el 89%, 84%, y 76% del máximo teórico) usando 2, 4, y 8 GPUs en paralelo. Siendo su implementación posible hoy en dia, los nodos de cálculo con múltiples aceleradores son una alternativa atractiva para futuros sistemas CAP

Multicore architecture optimizations for HPC applications

From single-core CPUs to detachable compute accelerators, supercomputers made a tremendous progress by using available transistors on chip and specializing hardware for a given type of computation. Today, compute nodes used in HPC employ multi-core CPUs tailored for serial execution and multiple accelerators (many-core devices or GPUs) for throughput computing. However, designing next-generation HPC system requires not only the performance improvement but also better energy efficiency. Current trend of reaching exascale level of computation asks for at least an order of magnitude increase in both of these metrics. This thesis explores HPC-specific optimizations in order to make better utilization of the available transistors and to improve performance by transparently executing parallel code across multiple GPU accelerators. First, we analyze several HPC benchmark suites, compare them against typical desktop applications, and identify the differences which advocate for proper core tailoring. Moreover, within the HPC applications, we evaluate serial and parallel code sections separately, resulting in an Asymmetric Chip Multiprocessor (ACMP) design with one core optimized for single-thread performance and many lean cores for parallel execution. Our results presented here suggests downsizing of core front-end structures providing an HPC-tailored lean core which saves 16% of the core area and 7% of power, without performance loss. Further improving an ACMP design, we identify that multiple lean cores run the same code during parallel regions. This motivated us to evaluate the idea where lean cores share the I-cache with the intent of benefiting from mutual prefetching, without increasing the average access latency. Our exploration of the multiple parameters finds the sweet spot on a wide interconnect to access the shared I-cache and the inclusion of a few line buffers to provide the required bandwidth and latency to sustain performance. The projections presented in this thesis show additional 11% area savings with a 5% energy reduction at no performance cost. These area and power savings might be attractive for many-core accelerators either for increasing the performance per area and power unit, or adding additional cores and thus improving the performance for the same hardware budget. Finally, in this thesis we study the effects of future NUMA accelerators comprised of multiple GPU devices. Reaching the limits of a single-GPU die size, next-generation GPU compute accelerators will likely embrace multi-socket designs increasing the core count and memory bandwidth. However, maintaining the UMA behavior of a single-GPU in multi-GPU systems without code rewriting stands as a challenge. We investigate multi-socket NUMA GPU designs and show that significant changes are needed to both the GPU interconnect and cache architectures to achieve performance scalability. We show that application phase effects can be exploited allowing GPU sockets to dynamically optimize their individual interconnect and cache policies, minimizing the impact of NUMA effects. Our NUMA-aware GPU outperforms a single GPU by 1.5×, 2.3×, and 3.2× while achieving 89%, 84%, and 76% of theoretical application scalability in 2, 4, and 8 sockets designs respectively. Implementable today, NUMA-aware multi-socket GPUs may be a promising candidate for performance scaling of future compute nodes used in HPC.Empezando por CPUs de un solo procesador, y pasando por aceleradores discretos, los supercomputadores han avanzado enormemente utilizando todos los transistores disponibles en el chip, y especializando los diseños para cada tipo de cálculo. Actualmente, los nodos de cálculo de un sistema de Computación de Altas Prestaciones (CAP) utilizan CPUs de múltiples procesadores, optimizados para el cálculo serial de instrucciones, y múltiples aceleradores (aceleradores gráficos, o many-core), optimizados para el cálculo paralelo. El diseño de un sistema CAP de nueva generación requiere no solo mejorar el rendimiento de cálculo, sino también mejorar la eficiencia energética. La siguiente generación de sistemas requiere mejorar un orden de magnitud en ambas métricas simultáneamente. Esta tesis doctoral explora optimizaciones específicas para sistemas CAP para hacer un mejor uso de los transistores, y para mejorar las prestaciones de forma transparente ejecutando las aplicaciones en múltiples aceleradores en paralelo. Primero, analizamos varios conjuntos de aplicaciones CAP, y las comparamos con aplicaciones para servidores y escritorio, identificando las principales diferencias que nos indican cómo ajustar la arquitectura para CAP. En las aplicaciones CAP, también analizamos la parte secuencial del código y la parte paralela de forma separada, . El resultado de este análisis nos lleva a proponer una arquitectura multiprocesador asimétrica (ACMP) , con un procesador optimizado para el código secuencial, y múltiples procesadores, más pequeños, optimizados para el procesamiento paralelo. Nuestros resultados muestran que reducir el tamaño de las estructuras del front-end (fetch, y predicción de saltos) en los procesadores paralelos nos proporciona un 16% extra de área en el chip, y una reducción de consumo del 7%. Como mejora a nuestra arquitectura ACMP, proponemos explotar el hecho de que todos los procesadores paralelos ejecutan el mismo código al mismo tiempo. Evaluamos una propuesta en que los procesadores paralelos comparten la caché de instrucciones, con la intención de que uno de ellos precargue las instrucciones para los demás procesadores (prefetching), sin aumentar la latencia media de acceso. Nuestra exploración de los distintos parámetros determina que el punto óptimo requiere una interconexión de alto ancho de banda para acceder a la caché compartida, y el uso de unos pocos line buffers para mantener el ancho de banda y la latencia necesarios. Nuestras proyecciones muestran un ahorro adicional del 11% en área y el 5% en energía, sin impacto en el rendimiento. Estos ahorros de área y energía permiten a un multiprocesador incrementar la eficiencia energética, o aumentar el rendimiento añadiendo procesador adicionales. Por último, estudiamos el efecto de usar múltiples aceleradores (GPU) en una arquitectura con tiempo de acceso a memoria no uniforme (NUMA). Una vez alcanzado el límite de número de transistores y tamaño máximo por chip, la siguiente generación de aceleradores deberá utilizar múltiples chips para aumentar el número de procesadores y el ancho de banda de acceso a memoria. Sin embargo, es muy difícil mantener la ilusión de un tiempo de acceso a memoria uniforme en un sistema multi-GPU sin reescribir el código de la aplicación. Nuestra investigación sobre sistemas multi-GPU muestra retos significativos en el diseño de la interconexión entre las GPU y la jerarquía de memorias cache. Nuestros resultados muestran que se puede explotar el comportamiento en fases de las aplicaciones para optimizar la configuración de la interconexión y las cachés de forma dinámica, minimizando el impacto de la arquitectura NUMA. Nuestro diseño mejora el rendimiento de un sistema con una única GPU en 1.5x, 2.3x y 3.2x (el 89%, 84%, y 76% del máximo teórico) usando 2, 4, y 8 GPUs en paralelo. Siendo su implementación posible hoy en dia, los nodos de cálculo con múltiples aceleradores son una alternativa atractiva para futuros sistemas CAP.Postprint (published version

Techniques For Accelerating Large-Scale Automata Processing

The big-data era has brought new challenges to computer architectures due to the large-scale computation and data. Moreover, this problem becomes critical in several domains where the computation is also irregular, among which we focus on automata processing in this dissertation. Automata are widely used in applications from different domains such as network intrusion detection, machine learning, and parsing. Large-scale automata processing is challenging for traditional von Neumann architectures. To this end, many accelerator prototypes have been proposed. Micron\u27s Automata Processor (AP) is an example. However, as a spatial architecture, it is unable to handle large automata programs without repeated reconfiguration and re-execution. We found a large number of automata states are never enabled in the execution but still configured on the AP chips, leading to its underutilization. To address this issue, we proposed a lightweight offline profiling technique to predict the never-enabled states and keep them out of the AP. Furthermore, we develop SparseAP, a new execution mode for AP to handle the misprediction efficiently. Our software and hardware co-optimization obtains 2.1x speedup over the baseline AP execution across 26 applications. Since the AP is not publicly available, we aim to reduce the performance gap between a general-purpose accelerator---Graphics Processing Unit (GPU) and AP. We identify excessive data movement in the GPU memory hierarchy and propose optimization techniques to reduce the data movement. Although our optimization techniques significantly alleviate these memory-related bottlenecks, a side effect of them is the static assignment of work to cores. This leads to poor compute utilization as GPU cores are wasted on idle automata states. Therefore, we propose a new dynamic scheme that effectively balances compute utilization with reduced memory usage. Our combined optimizations provide a significant improvement over the previous state-of-the-art GPU implementations of automata. Moreover, they enable current GPUs to outperform the AP across several applications while performing within an order of magnitude for the rest of them. To make automata processing on GPU more generic to tasks with different amounts of parallelism, we propose AsyncAP, a lightweight approach that scales with the input length. Threads run asynchronously in AsyncAP, alleviating the bottleneck of thread block synchronization. The evaluation and detailed analysis demonstrate that AsyncAP achieves significant speedup or at least comparable performance under various scenarios for most of the applications. The future work aims to design automatic ways to generate optimizations and mappings between automata and computation resources for different GPUs. We will broaden the scope of this dissertation to domains such as graph computing

Performance characterization and acceleration of genome-mapping tools on HPC environments

Nowadays, the efficient analysis and exploitation of genomic information is paramount to future advancements in the healthcare sector, such as better diagnosis techniques and the development of improved disease treatments. In the past decades, the exponential increase in the biological data production has fostered the development of more efficient genomic pipelines. For that, modern genome analysis requires better and more scalable algorithms, and improved high-performance implementations that can exploit current hardware accelerators. For most genome analysis pipelines, sequence mapping is one of the most computationally intensive and time-consuming processing stages. The ultimate goal of this work is to propose techniques to accelerate read mapping, leveraging novel algorithms and hardware vector extensions. In this thesis, we present a thorough performance characterization of the most widely-used genome-mapping tools and propose acceleration techniques that can effectively improve the performance of these tools. To that end, first, we identify the most time-consuming kernels, their performance bottlenecks, and the underlying causes of inefficiency. Afterwards, we design and implement an accelerated version of one of the most time-consuming steps: pairwise sequence alignment. For that, we propose to replace the classical dynamic-programming algorithm, used within these tools, with the recently proposed wavefront alignment algorithm (WFA). Moreover, we design and implement the first fully-vectorized version of the WFA, leveraging Intel's AVX2 and AVX-512 instructions, to further accelerate sequence-to-sequence alignment. As a result, we demonstrate that our vectorized WFA implementation outperforms the original scalar WFA implementation between 1.1x-2.4x. In turn, this renders speedups from 2.4x up to 826.7x compared to the most widely-used alignment algorithm, KSW2 (used within Minimap2 and Bwa-Mem2). We conclude that these tools can be significantly accelerated by selecting better algorithms (like the WFA) and leveraging fine-tuned implementations that can exploit hardware resources available in current high performance computing (HPC) processors