What scans we will read: imaging instrumentation trends in clinical oncology

Oncological diseases account for a significant portion of the burden on public healthcare systems with associated costs driven primarily by complex and long-lasting therapies. Through the visualization of patient-specific morphology and functional-molecular pathways, cancerous tissue can be detected and characterized non- invasively, so as to provide referring oncologists with essential information to support therapy management decisions. Following the onset of stand-alone anatomical and functional imaging, we witness a push towards integrating molecular image information through various methods, including anato-metabolic imaging (e.g., PET/ CT), advanced MRI, optical or ultrasound imaging. This perspective paper highlights a number of key technological and methodological advances in imaging instrumentation related to anatomical, functional, molecular medicine and hybrid imaging, that is understood as the hardware-based combination of complementary anatomical and molecular imaging. These include novel detector technologies for ionizing radiation used in CT and nuclear medicine imaging, and novel system developments in MRI and optical as well as opto-acoustic imaging. We will also highlight new data processing methods for improved non-invasive tissue characterization. Following a general introduction to the role of imaging in oncology patient management we introduce imaging methods with well-defined clinical applications and potential for clinical translation. For each modality, we report first on the status quo and point to perceived technological and methodological advances in a subsequent status go section. Considering the breadth and dynamics of these developments, this perspective ends with a critical reflection on where the authors, with the majority of them being imaging experts with a background in physics and engineering, believe imaging methods will be in a few years from now. Overall, methodological and technological medical imaging advances are geared towards increased image contrast, the derivation of reproducible quantitative parameters, an increase in volume sensitivity and a reduction in overall examination time. To ensure full translation to the clinic, this progress in technologies and instrumentation is complemented by progress in relevant acquisition and image-processing protocols and improved data analysis. To this end, we should accept diagnostic images as “data”, and – through the wider adoption of advanced analysis, including machine learning approaches and a “big data” concept – move to the next stage of non-invasive tumor phenotyping. The scans we will be reading in 10 years from now will likely be composed of highly diverse multi- dimensional data from multiple sources, which mandate the use of advanced and interactive visualization and analysis platforms powered by Artificial Intelligence (AI) for real-time data handling by cross-specialty clinical experts with a domain knowledge that will need to go beyond that of plain imaging

COMPUTATIONAL ULTRASOUND ELASTOGRAPHY: A FEASIBILITY STUDY

Ultrasound Elastography (UE) is an emerging set of imaging modalities used to assess the biomechanical properties of soft tissues. UE has been applied to numerous clinical applications. Particularly, results from clinical trials of UE in breast lesion differentiation and staging liver fibrosis indicated that there was a lack of confidence in UE measurements or image interpretation. Confidence on UE measurements interpretation is critically important for improving the clinical utility of UE. The primary objective of my thesis is to develop a computational simulation platform based on open-source software packages including Field II, VTK, FEBio and Tetgen. The proposed virtual simulation platform can be used to simulate SE and acoustic radiation force based SWE simulations, including pSWE, SSI and ARFI. To demonstrate its usefulness, in this thesis, examples for breast cancer detections were provided. The simulated results can reproduce what has been reported in the literature. To statistically analyze the intrinsic variations of shear wave speed (SWS) in the fibrotic liver tissues, a probability density function (PDF) of the SWS distribution in conjunction with a lossless stochastic tissue model was derived using the principle of Maximum Entropy (ME). The performance of the proposed PDF was evaluated using Monte-Carlo (MC) simulated shear wave data and against three other commonly used PDFs. We theoretically demonstrated that SWS measurements follow a non-Gaussian distribution for the first time. One advantage of the proposed PDF is its physically meaningful parameters. Also, we conducted a case study of the relationship between shear wave measurements and the microstructure of fibrotic liver tissues. Three different virtual tissue models were used to represent underlying microstructures of fibrotic liver tissues. Furthermore, another innovation of this thesis is the inclusion of “biologically-relevant” fibrotic liver tissue models for simulation of shear wave elastography. To link tissue structure, composition and architecture to the ultrasound measurements directly, a “biologically relevant” tissue model was established using Systems Biology. Our initial results demonstrated that the simulated virtual liver tissues qualitatively could reproduce histological results and wave speed measurements. In conclusions, these computational tools and theoretical analysis can improve the confidence on UE image/measurements interpretation

Association entre l'élastographie vasculaire non invasive et l'indice de masse corporelle chez les enfants

Sachant que l’Athérosclérose commence durant l’enfance par des marqueurs subcliniques, cette étude explore l’association entre l’indice de masse corporelle (IMC) et l’élastographie vasculaire non-invasive (NIVE) des artères carotides communes chez les enfants. On compare aussi les techniques de mesure de l’intima-média (IMT) des artères carotides en se basant sur le mode-B et la radiofréquence (RF) chez les enfants avec IMC normal et élevé. Il s’agit d’une étude prospective effectuée entre 2005 et 2011. Les paramètres de « NIVE » ont été comparés pour deux groupes d’IMC (normal et élevé) de 60 enfants respectivement, faisant tous partie de la cohorte de l’étude QUebec Adipose and Lifestyle Investigation in Youth (QUALITY). Les paramètres de NIVE incluent la contrainte axiale cumulative (CAS) en %, la translation axiale cumulative (CAT) en mm. L’épaisseur de l’intima-média est calculée selon trois méthodes : logiciel «M’ath-Std» (mode-B), « echotracking » des signaux de RF et probabilité de distribution des signaux de RF sur la plateforme NIVE. Une analyse ANOVA et corrélation Pearson ont été effectuées sur le logiciel SAS version 9.3. Une corrélation intra-class (ICC) a été effectuée sur un logiciel MedCalc version 17.2. L’âge moyen était 11,4 ans pour le groupe IMC normal et 12 pour le groupe IMC élevé. Cinquante-huit pourcent étaient des garçons dans le groupe IMC normal et 63% dans le groupe IMC élevé. Les deux groupes étaient différents selon l’âge, stade de Tanner, tension artérielle (systolique et diastolique), et LDL mais similaire pour le sexe. En contrôlant pour les variables confondantes, la CAS n’est pas différente entre les deux groupes. La CAT est plus basse chez les enfants avec IMC normal (CAT=0.51 +/-0.17 mm pour le groupe « IMC normal » et 0.67+/-0.24 mm pour le groupe « IMC élevé » (p<0.001)). Il y a une très faible corrélation entre les trois techniques de mesure d’IMT ICC=0,34 (95% intervalle de confiance 0,27-0,39). L’IMT est significativement plus élevé dans le groupe d’enfants « IMC élevé ». Mode-B (0.55 mm « IMC normal » vs. 0.57 mm « IMC élevé »; p=0.02); IMT RF (0.45 mm « IMC normal » vs. 0.48 mm « IMC élevé »; p=0.03) et IMT probabilité de distribution des signaux RF (0.32 mm « IMC normal » vs. 0.35 mm « IMC élevé »; p=0.010). La NIVE montre une différence significative dans la CAT de l'artère carotide commune des enfants avec un IMC normal par rapport à l'IMC élevé. Des variations significatives de la mesure des IMT ont été observées entre les différentes techniques. Cependant, les enfants avec IMC élevé ont des valeurs IMT plus élevées, indépendamment de la méthode utilisée. Les deux marqueurs subcliniques peuvent être utilisés pour la stratification des enfants à risque de maladies cardiovasculaires. La même méthode devrait toujours être utilisée.Knowing that cardiovascular disease risk factors are present in asymptomatic children, this study explores the association between non-invasive vascular elastography (NIVE) as a subclinical marker of atherosclerosis and obesity in children. In the absence of a gold standard, we also compare B-mode and Radiofrequency (RF) based ultrasound measurements of intima-media thickness (IMT) in children with normal and increased body mass index (BMI). This is a prospective study between 2005 and 2011. NIVE parameters and IMT of the common carotid artery were compared between 60 children with normal BMI and 60 children with increased BMI enrolled in the QUebec Adipose and Lifestyle Investigation in Youth cohort (QUALITY). NIVE parameters included cumulated axial strain (CAS) (%) and cumulated axial translation (CAT) in mm. The three methods of IMT measurements included M’ath Std (B-mode), RF echotracking system and RF probability distribution using NIVE platform. ANOVA analysis and Pearson correlation were calculated using SAS version 9.3. Intra-class correlation coefficient (ICC) and regression analysis was done on MedCalc software version 17.2. The mean age was 11.4 years for the normal BMI group and 12 years for the increased BMI group. Fifty-eight percent were boys in the normal BMI group and 63% in the increased BMI group. The two groups were significantly different with respect to age, Tanner stage, systolic and diastolic blood pressure and were similar with respect to sex. After controlling for confounders, the results show no difference in CAS between the two groups and a significantly lower CAT in the normal BMI group (CAT=0.51+/-0.17 mm for the normal BMI group and 0.67+/-0.24 mm for the increased BMI group (p<0.001)). There is a weak correlation among the three techniques. ICC=0.34 (95% confidence interval (CI): 0.27-0.39). There is however significantly increased IMT in children with increased BMI according to all three techniques. The results were as follow: for B-mode IMT (0.55 mm (normal BMI group) vs. 0.57 mm (increased BMI group); p=0.02); for RF echotracking IMT (0.45 mm (normal BMI group) vs. 0.48 mm (increased BMI group); p=0.03) and for RF probability distribution IMT (0.32 mm (normal BMI group) vs. 0.35 mm (increased BMI group); p=0.010).NIVE is a one-step technique for IMT and CAT measurement in children at risk. Significant IMT measurement variation is observed between the three techniques. However, children with increased BMI tend to have higher IMT values regardless of the technique. Both subclinical markers can be used for optimal stratification of children with cardiovascular disease risk factors. The same technique should be used throughout

Noninvasive ARFI Ultrasound for Differentiating Carotid Plaque with High Stroke Risk

Stroke is the leading cause of death worldwide. Fortunately, incidence and mortality rates are declining due to the successes of pharmaceutical therapies and revascularization procedures such as carotid endarterectomy (CEA). While CEA has high efficacy for preventing stroke in patients with severe (>70%) carotid stenosis, its usefulness decreases as stroke risk declines in patients without symptoms and less severe stenosis. Clinical studies show that 13 out of 14 symptomatic patients with 50-69% stenosis, and 21 out of 22 asymptomatic patients with severe stenosis undergo CEA unnecessarily. There is an unmet need to identify vulnerable carotid plaque and indicate stroke risk.Improving the assessment of carotid plaque vulnerability could be met by analyzing plaque structure and composition. Post-mortem studies have shown that the presence of thin or ruptured fibrous caps (TRFC), lipid-rich necrotic cores (LRNC), and intraplaque hemorrhage (IPH) is associated with high stroke risk. Further, MRI studies have shown association between the presence of TRFC and IPH with previous stroke or transient ischemic attack (TIA), with increased risk of stroke conferred by TRFC, LRNC, and IPH, in human carotid plaques. While features that convey vulnerability to rupture are well known, there is currently no established low-cost, noninvasive imaging method that consistently characterizes plaque structure and composition.The project proposed herein aims to develop and evaluate Acoustic Radiation Force Impulse (ARFI)-based ultrasound techniques for delineating the structure and composition of carotid plaque in humans. First, novel ARFI imaging methods are evaluated in terms of sensitivity and specificity for detecting of calcium, collagen, lipid-rich necrotic core, and intraplaque hemorrhage in human atherosclerotic plaques in vivo. Second, an automatic classification framework is developed and compared to a human reader-based ARFI image assessment. Third, the automatic classifier performance is improved by including additional data acquisitions in the cardiac cycle, and using high frequency and harmonic tracking. Overall, this project demonstrates the efficacy of ARFI ultrasound, evaluating log(VoA) and with a machine learning-based automatic classifier, to delineate vulnerable plaque components in human carotid plaques in vivo. These findings have the potential to improve the current state of the art in clinical diagnosis and management of atherosclerosis.Doctor of Philosoph